View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_128 (Length: 266)
Name: NF3772_high_128
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_128 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 56189088 - 56189353
Alignment:
| Q |
1 |
aagaaacacaatcttatgagcagaaactaaaagacaattgaattcttgcagctataactaaaagattgataacatcaaatcctacattttgaagttgaca |
100 |
Q |
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| T |
56189088 |
aagaaacacaatcttatgagcagaaactaaaagacaattgaattcttgcagctataactaaaagattgataacatcaaatcctacattttgaagttgaca |
56189187 |
T |
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| Q |
101 |
ttgtttgaccatagttactctgaatagctttgagaaatattaaaattataaattatcagaatcagaagcaaatgggcaagtaaaaacaactttctcatta |
200 |
Q |
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| T |
56189188 |
ttgtttgaccatagttactctgaatagctttgagaaatattaaaattataaattatcagaatcagaagcaaatgggcaaataaaaacaactttctcatta |
56189287 |
T |
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| Q |
201 |
cttagcattttttacaagtatcttaactattacgtgctatacatcaaaggcaaaccaagaatccac |
266 |
Q |
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| T |
56189288 |
cttagcattttttacaagtatcttaactatgacgtgctatacatcaaaggcaaaccaagaatccac |
56189353 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 2392103 - 2391922
Alignment:
| Q |
65 |
attgataacatcaaatcctacattttgaagttgaca-ttgtttgaccatagttactctgaatagctttgagaaatattaaaattataaattatcagaatc |
163 |
Q |
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||||||||||| |||| ||||||||| ||||| | | ||||||||||||||| ||||||||||| |||| |||||||| |||| |||||||||| |
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| T |
2392103 |
attgataacataaaattctacatttt-aagttaataattgtttgaccatagtaactctgaatag--ttgaaaaatattacaatt------tatcagaatc |
2392013 |
T |
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| Q |
164 |
agaagcaaatgggcaagtaaaaacaactttctcattacttagcattttttacaagtatcttaactattacg--tgctatacatcaaaggcaa |
253 |
Q |
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| T |
2392012 |
agaagcaaatggacaaataaaaa-aactttctcattactcggcattttgtacaagtgtgttaactatgacgtttactatatatcaaaggcaa |
2391922 |
T |
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