View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_130 (Length: 264)

Name: NF3772_high_130
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_130
NF3772_high_130
[»] chr3 (34 HSPs)
chr3 (16-255)||(12145954-12146193)
chr3 (16-240)||(27376152-27376376)
chr3 (16-255)||(11418664-11418900)
chr3 (57-242)||(18026593-18026778)
chr3 (16-239)||(27918321-27918541)
chr3 (119-242)||(27347390-27347513)
chr3 (16-240)||(28081691-28081912)
chr3 (118-255)||(27392396-27392533)
chr3 (93-240)||(17746332-17746479)
chr3 (93-240)||(19047652-19047799)
chr3 (16-244)||(28183708-28183936)
chr3 (16-239)||(27975298-27975521)
chr3 (98-240)||(28131895-28132037)
chr3 (128-255)||(19472290-19472417)
chr3 (16-179)||(28147740-28147903)
chr3 (18-238)||(27461130-27461347)
chr3 (118-239)||(28002148-28002269)
chr3 (16-179)||(28481585-28481748)
chr3 (118-240)||(28482023-28482145)
chr3 (118-240)||(28510835-28510957)
chr3 (118-244)||(28147507-28147633)
chr3 (118-239)||(28053445-28053566)
chr3 (118-239)||(28063870-28063991)
chr3 (112-166)||(26180769-26180823)
chr3 (114-166)||(26210262-26210314)
chr3 (114-166)||(26237506-26237558)
chr3 (118-168)||(28481855-28481905)
chr3 (16-91)||(27392318-27392393)
chr3 (16-86)||(27347513-27347583)
chr3 (116-164)||(26131736-26131784)
chr3 (16-84)||(28481945-28482013)
chr3 (123-166)||(26115163-26115206)
chr3 (115-166)||(26142467-26142518)
chr3 (117-174)||(27457156-27457213)
[»] chr2 (2 HSPs)
chr2 (16-242)||(22391072-22391298)
chr2 (105-232)||(8019729-8019859)
[»] scaffold0043 (1 HSPs)
scaffold0043 (93-242)||(54886-55035)
[»] chr7 (1 HSPs)
chr7 (93-240)||(8693495-8693645)
[»] scaffold0257 (1 HSPs)
scaffold0257 (118-239)||(17299-17420)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 12146193 - 12145954
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12146193 agattggaaacacatattttaacattttgcacctttttaccacaagtgtttttagctttgggaagcatacagtcttggtagccataaaatttgaggattt 12146094  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  12146093 tttactctccaaatcatcttcaatcatatgcttcaactcattgcattcatcaattcttatatgaagcaactgcggtaggcacattattatagaagtagag 12145994  T
Q  216 aaaacaaattccaatttttcacatcccttaatgttcatct 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12145993 aaaacaaattccaatttttcacatcccttaatgttcatct 12145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 27376376 - 27376152
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  27376376 agattggaaagacatttttcaacattttgcacattcttaccacaagtgtttgtagctttgggaagcatacagtcttggtggccataaaatttgaggactt 27376277  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  27376276 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcatcaattcttatatgaagcaactgcggtaggcacattattatagaagtagag 27376177  T
Q  216 aaaacaaattccaatttttcacatc 240  Q
    |||||||||||||| |||| |||||    
T  27376176 aaaacaaattccaaatttttacatc 27376152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 11418900 - 11418664
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| ||  ||| |||||||||| ||||||||||||||||   ||||| |||||||||||||||||||| ||    
T  11418900 agattggaaaaacatatttcaacttgttgcactttgctacaacaagtgtttttagctttgggaagcat---gtctttgtagccataaaatttgaggaatt 11418804  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  11418803 tttattctccaagtcatcttcaatcatatgcttcaactctttgcattcttcaattcttatatgaagcaactgcggttggcacattattatagaagtagag 11418704  T
Q  216 aaaacaaattccaatttttcacatcccttaatgttcatct 255  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  11418703 aaaacaaatttcaatttttcacatcccttaattttcatct 11418664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 18026593 - 18026778
Alignment:
Q  57 acaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattttttattctccaaatcatcttcaatcatatgcttcaactcct 156  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  18026593 acaagtgtttttagctttgggaagcatacagtctttgcaaccataaagtttgaggattttttattctccaaatcatcttcaataatatgcttcaactctt 18026692  T
Q  157 tgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaaaacaaattccaatttttcacatccc 242  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  18026693 tgcaatcttcaattcttatatgatgcaactgcggtaggcacattattatagaaatagagaaaataatctccaatttttcacatccc 18026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 27918541 - 27918321
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| ||  |||  |||| | | ||||||||||||||||||   |||| |||| ||||||| ||||||||||    
T  27918541 agattggaaagacatatttcaacttgttgcactttactacagcaagagatcgtagctttgggaagcata---tctttgtagacataaaaattgaggattt 27918445  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||  |||||| | | |    
T  27918444 tttattctccaaatcatcttcaataatatacttcaactctttgcattcttcaattcttatatgaagcaactgcggcagacatcttaaaatagaagtgggg 27918345  T
Q  216 aaaacaaattccaatttttcacat 239  Q
    ||||||| || |||||||||||||    
T  27918344 aaaacaattttcaatttttcacat 27918321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 27347513 - 27347390
Alignment:
Q  119 attctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaaa 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  27347513 attctccaaatcatcttcaatcatatgcttcaactctttgcatttttcaattcttatatgaagcaactgcggtagacacattattatagaagtagagaaa 27347414  T
Q  219 acaaattccaatttttcacatccc 242  Q
     ||| |||||||||||||||||||    
T  27347413 gcaatttccaatttttcacatccc 27347390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 28081912 - 28081691
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | || ||| ||  ||| ||||||||||  |||||| | ||||||   ||||| |||| ||||||||||||||||||    
T  28081912 agattggaaagacatatttcaacttgttacactttgctacaacaagtgttttcagcttttgaaagcat---gtctttgtagacataaaatttgaggattt 28081816  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||| | ||||||| ||||| ||| |||||||| || | |||    
T  28081815 tttattctccaaatcatcttcaataatatgctttaactctttgcattcttcaactcttatataatgcaactgtggcagacaccttattatacaagtggag 28081716  T
Q  216 aaaacaaattccaatttttcacatc 240  Q
    |||| || || ||||||||||||||    
T  28081715 aaaataattttcaatttttcacatc 28081691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 27392396 - 27392533
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||||| |||||||||||| ||||| || | |||| |||| ||||||||||| || |||||||||||||||||| |||||||    
T  27392396 tattctccaaatcatcttcaatcaaatgcttcaactctttgcagtcattaattattatgtgaagcaactgtggtaggcacattattatagaagtagagaa 27392495  T
Q  218 aacaaattccaatttttcacatcccttaatgttcatct 255  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  27392496 aacaatttccaatttttcacatcccttaattttcatct 27392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 17746332 - 17746479
Alignment:
Q  93 gtagccataaaatttgaggattttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggca 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||| ||||||||||||||||| |||||| |||| || || |    
T  17746332 gtagacataaaatttgaggattttttattctccaaatcatcttcaaaaatatgtgtcaactctttgcattcttcaattctcatatgacgcaattgtggta 17746431  T
Q  193 ggcacattattatagaattagagaaaacaaattccaatttttcacatc 240  Q
    | ||| |||||||||||||||||||||||| |  ||||||||||||||    
T  17746432 gacaccttattatagaattagagaaaacaattatcaatttttcacatc 17746479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 19047652 - 19047799
Alignment:
Q  93 gtagccataaaatttgaggattttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggca 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||  ||||||| ||||||||||||||||| |||||| |||| || || |    
T  19047652 gtagacataaaatttgaggattttttattctccaaatcatcttcaaaaatatgtgtcaactctttgcattcttcaattctcatatgacgcaattgtggta 19047751  T
Q  193 ggcacattattatagaattagagaaaacaaattccaatttttcacatc 240  Q
    | ||| |||||||||||||||||||||||| |  ||||||||||||||    
T  19047752 gacaccttattatagaattagagaaaacaattatcaatttttcacatc 19047799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 28183936 - 28183708
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| ||| ||| |||| | ||| ||||||||||||| ||    |  | |||| ||||||||||||||| ||    
T  28183936 agattggaaacacatatttcaacttgttgcacttttctacaacaactttttctagctttgggaagaatgtctttgttgtagacataaaatttgaggaatt 28183837  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| |  |||||| || || ||| |||||| |||| | | |    
T  28183836 tttattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattctcatataatacaactgtggtagacaccttattacagaagtggtg 28183737  T
Q  216 aaaacaaattccaatttttcacatccctt 244  Q
    ||||||| || ||| ||||||||||||||    
T  28183736 aaaacaattttcaacttttcacatccctt 28183708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 27975521 - 27975298
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| ||||||| |||||||||| || |||||||||||||    |  | |||| ||||||||||||||||||    
T  27975521 agattggaaacacatatttcaacttgttgcacctttttacaacaagtgtttttaactttgggaagcatgtctttgttgtagacataaaatttgaggattt 27975422  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    | ||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||| |||  |  |||||| || || |||  || ||||||| | | |    
T  27975421 tctattctccaaatcatattcaattatatgcttcaactctttgcactcttcaattctcatagaatacaactgtggtagacaccatactatagaagtgggg 27975322  T
Q  216 aaaacaaattccaatttttcacat 239  Q
    ||||||| || |||||||||||||    
T  27975321 aaaacaattttcaatttttcacat 27975298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 28132037 - 28131895
Alignment:
Q  98 cataaaatttgaggattttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcac 197  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |    ||||||||| || ||  ||    
T  28132037 cataaaatttgaggattttttattctccaaatcatcttcaattatatgcttcaattctttgcattcttcaattctcaagataagcaactgtggtagatac 28131938  T
Q  198 attattatagaattagagaaaacaaattccaatttttcacatc 240  Q
     ||||||||||| | |||||||||| || ||||||||||||||    
T  28131937 cttattatagaagtggagaaaacaattttcaatttttcacatc 28131895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 19472417 - 19472290
Alignment:
Q  128 atcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaaaacaaattcc 227  Q
    |||||||||||||| |||||||||||| ||||| || | |||| |||| ||||||| |||||| |||||||||||||||||  | |||||||||  ||||    
T  19472417 atcatcttcaatcaaatgcttcaactctttgcagtcattaattattatgtgaagcagctgcggtaggcacattattatagatgtggagaaaacattttcc 19472318  T
Q  228 aatttttcacatcccttaatgttcatct 255  Q
    |||||||||||||||||||| |||||||    
T  19472317 aatttttcacatcccttaattttcatct 19472290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 28147903 - 28147740
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| |||  || |||||| ||  ||||||||||||||||    |  | || | ||||||||||||||||||    
T  28147903 agattggaaacacatatttcaacttgttgcacttttccacaacaagtattcttagctttgggaagcatgtctttgttgtggacataaaatttgaggattt 28147804  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatga 179  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  28147803 tttattctccaaatcatcttcaataatatgcctcaactcattgcattcttcaattctcatatga 28147740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 27461130 - 27461347
Alignment:
Q  18 attggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattttt 117  Q
    |||||||| |||||||| |||   |||||| ||  ||| | ||||||||  |||||||||||||||   ||||| ||||  |||||||||||||| ||||    
T  27461130 attggaaagacatatttcaactgattgcactttactacaataagtgttttaagctttgggaagcat---gtctttgtagaaataaaatttgaggagtttt 27461226  T
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    | ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||  |||||  || || || ||| ||| ||||||| | |||||    
T  27461227 tgttctccaaatcatattcaattatatgcttcaactctttgcattcttcaattctcataaaaagcagttgtggtagacaccttactatagaagtggagaa 27461326  T
Q  218 aacaaattccaatttttcaca 238  Q
    ||||  || ||||||||||||    
T  27461327 aacagttttcaatttttcaca 27461347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 28002269 - 28002148
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| |  |||||| || || ||| ||||||||||| | |||||    
T  28002269 tattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaattctcatataattcaactgtggtagacaccttattatagaagtggagaa 28002170  T
Q  218 aacaaattccaatttttcacat 239  Q
    ||||| || |||||||||||||    
T  28002169 aacaattttcaatttttcacat 28002148  T

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Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 28481585 - 28481748
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| |||||||| ||| | |||||| |||  || ||||||  |  ||||||||||||||||    |  | |||| ||||||||||||||| ||    
T  28481585 agattggaaacacatatttcaacttgttgcacttttccacaacaagtagtgttagctttgggaagcatgtctttgttgtagacataaaatttgaggaatt 28481684  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatga 179  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  28481685 tttattctccatatcatcttcaataatatgcctcaactcattgcattcttcaattctcatatga 28481748  T

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Target: chr3; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 28482023 - 28482145
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| |  |||||| || || ||| |||||| |||| | |||||    
T  28482023 tattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattctcatataatacaactgtggtagacaccttattacagaagtggagaa 28482122  T
Q  218 aacaaattccaatttttcacatc 240  Q
    ||||| || ||||||||||||||    
T  28482123 aacaattttcaatttttcacatc 28482145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 28510835 - 28510957
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| | |  || |||||| |||||  || ||||||||||| | |||||    
T  28510835 tattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaattctcaaagtaaacaactgtggcagataccttattatagaagtggagaa 28510934  T
Q  218 aacaaattccaatttttcacatc 240  Q
    ||||| || ||||||||||||||    
T  28510935 aacaattttcaatttttcacatc 28510957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 28147633 - 28147507
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| |  |||||| || || ||| |||||| |||| | | |||    
T  28147633 tattctccaaatcatcttcaataatatgcttcaactcattgcactcttcaattctcatataatacaactgtggtagacaccttattacagaagtggtgaa 28147534  T
Q  218 aacaaattccaatttttcacatccctt 244  Q
    ||||| || ||| ||||||||||||||    
T  28147533 aacaattttcaacttttcacatccctt 28147507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 28053566 - 28053445
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||||||||| | |  ||||||||| || ||  || ||||||||||| | |||||    
T  28053566 tattctccaaatcatcttcaaaaatatgcttcaactcgttgcattcttcaattctcaaagtaagcaactgtggtagataccttattatagaagtggagaa 28053467  T
Q  218 aacaaattccaatttttcacat 239  Q
     |||| || |||||||||||||    
T  28053466 tacaattttcaatttttcacat 28053445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 28063991 - 28063870
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||||||||| | |  ||||||||| || ||  || ||||||||||| | |||||    
T  28063991 tattctccaaatcatcttcaaaaatatgcttcaactcgttgcattcttcaattctcaaagtaagcaactgtggtagataccttattatagaagtggagaa 28063892  T
Q  218 aacaaattccaatttttcacat 239  Q
     |||| || |||||||||||||    
T  28063891 tacaattttcaatttttcacat 28063870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 26180769 - 26180823
Alignment:
Q  112 attttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttc 166  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  26180769 attttttatcctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 26210262 - 26210314
Alignment:
Q  114 tttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttc 166  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  26210262 tttttatcctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 26237506 - 26237558
Alignment:
Q  114 tttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttc 166  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  26237506 tttttatcctccaaatcatcttcaatgatatgcttcaactctttgcattcttc 26237558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 28481855 - 28481905
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaa 168  Q
    |||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  28481855 tattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaa 28481905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 27392318 - 27392393
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtctt 91  Q
    |||||||||| |||||||| |||||||||||| ||| ||| |||| |||||  ||||||||||||| |||| ||||    
T  27392318 agattggaaacacatatttcaacattttgcacttttctacaacaactgttttgagctttgggaagcgtacaatctt 27392393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 27347583 - 27347513
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcataca 86  Q
    |||||||||| |||||||| ||||| ||||||  |||||| ||||  ||| ||||||||||||||||||||    
T  27347583 agattggaaacacatatttcaacatgttgcactcttttacaacaacagttcgtagctttgggaagcataca 27347513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 26131736 - 26131784
Alignment:
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattct 164  Q
    ||||| |||||||||||||||||| | |||||||||||| |||||||||    
T  26131736 tttatcctccaaatcatcttcaatgaaatgcttcaactctttgcattct 26131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 28481945 - 28482013
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcata 84  Q
    |||||||||| |||||||| ||| | |||||| ||  ||| |||||| |||||||||||||||||||||    
T  28481945 agattggaaacacatatttcaacttgttgcactttactactacaagtatttgtagctttgggaagcata 28482013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 26115163 - 26115206
Alignment:
Q  123 tccaaatcatcttcaatcatatgcttcaactccttgcattcttc 166  Q
    |||||||| |||||||| |||||||||||||| |||||||||||    
T  26115163 tccaaatcgtcttcaatgatatgcttcaactctttgcattcttc 26115206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 26142467 - 26142518
Alignment:
Q  115 ttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttc 166  Q
    |||||| |||||||||||||||||| ||||||||||| || | |||||||||    
T  26142467 ttttatcctccaaatcatcttcaatgatatgcttcaattcttcgcattcttc 26142518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 27457156 - 27457213
Alignment:
Q  117 ttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattctta 174  Q
    ||||||| |||||||| |||||| |||||||||||||| || ||||| || |||||||    
T  27457156 ttattcttcaaatcatattcaatgatatgcttcaactctttacattcgtctattctta 27457213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 22391298 - 22391072
Alignment:
Q  16 agattggaaatacatattttaacattttgcacatttttaccacaagtgtttgtagctttgggaagcatacagtcttggtagccataaaatttgaggattt 115  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||    
T  22391298 agattggaaagacatattttaacattttgcacttttctaccacaagtgattgtagctttgggaagcctacagtctttgcagccataaaatttgaggattt 22391199  T
Q  116 tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagag 215  Q
    |||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||| ||||||||| || || ||| ||||||||||| |||||    
T  22391198 tttattctccaaatcatcttcaataatatgcttcaattctttgcattcttcaattctcatatcaagcaactgtggtagacaccttattatagaagtagag 22391099  T
Q  216 aaaacaaattccaatttttcacatccc 242  Q
    |||||||||||||||||||||||||||    
T  22391098 aaaacaaattccaatttttcacatccc 22391072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 8019859 - 8019729
Alignment:
Q  105 tttgaggattttttattctccaaatcatc---ttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacatta 201  Q
    |||||||||||||||| ||||||||||||   |||||| |||| ||| ||||| ||||||||||  ||||| || | ||| || || || || ||  |||    
T  8019859 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattctttgattctcatcttaagtaagtgaggtagacatctta 8019760  T
Q  202 ttatagaattagagaaaacaaattccaattt 232  Q
    |||||||| | |||||||||| || ||||||    
T  8019759 ttatagaagtggagaaaacaattttcaattt 8019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 242
Target Start/End: Original strand, 54886 - 55035
Alignment:
Q  93 gtagccataaaatttgaggattttttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggca 192  Q
    |||| |||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  54886 gtagacatagaatgtgtggagtttttattctccaaatcatcttcaatcatatgcttcaactctttgcattcttcaattcttatatgaagcaactgaggta 54985  T
Q  193 ggcacattattatagaattagagaaaacaaattccaatttttcacatccc 242  Q
    | |||||||| |||||| |||||||||||| |||||||||||||||||||    
T  54986 gacacattatcatagaagtagagaaaacaatttccaatttttcacatccc 55035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 8693495 - 8693645
Alignment:
Q  93 gtagccataaaatttgaggattt---tttattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcg 189  Q
    |||| ||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||| |    
T  8693495 gtagacataaaatttgaggatttatttttattctccaaatcatcttcaataatatgcttcaactctttgcattcttcaattctcatataaagcaactgtg 8693594  T
Q  190 gcaggcacattattatagaattagagaaaacaaattccaatttttcacatc 240  Q
    | || ||| ||||||||||| |||||||||||| || ||||||||||||||    
T  8693595 gtagacaccttattatagaagtagagaaaacaattttcaatttttcacatc 8693645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 17420 - 17299
Alignment:
Q  118 tattctccaaatcatcttcaatcatatgcttcaactccttgcattcttcaattcttatatgaagcaactgcggcaggcacattattatagaattagagaa 217  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||| | |||| |  |||||| || || ||| |||||| |||| | |||||    
T  17420 tattctccaaatcatcttcaatgatatgcttcaactcattgcactcttcaattgtcatataatacaactgtggtagacaccttattacagaagtggagaa 17321  T
Q  218 aacaaattccaatttttcacat 239  Q
    ||||| || |||||||||||||    
T  17320 aacaattttcaatttttcacat 17299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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