View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_14 (Length: 564)
Name: NF3772_high_14
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 12557118 - 12557656
Alignment:
| Q |
1 |
cagcgaatcaaaaaagaatcactgttccagaaattcacaaagaaacaataaaaatacagatcaattttaactcaaaactgaagaaaatctggaggagtaa |
100 |
Q |
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| T |
12557118 |
cagcgaatcaaaaaagaatcactgttccagaaattcacaaagaaacaataaaaatacagatcaattttaactcaaaactgaagaaaatctggaggagtaa |
12557217 |
T |
|
| Q |
101 |
catgttcaagatggaaaaccagaagagtaatcagaaactggaatcacaaaccgtaacatgtggagaatctgaaagaatattgtcgacagagagagggggc |
200 |
Q |
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| T |
12557218 |
catgttcaagatggcaaaccagaagagtaatcagaaactggaatcacaaaccgtaacatgtggagaatctgaaagaatattgtcgacagagagagggggt |
12557317 |
T |
|
| Q |
201 |
gggagagaaattaagaagatcagtgaactaggtaagagagaaaaaattttaccaacaaacaagaaggtaaacacaaatagaagttacattaccgaatata |
300 |
Q |
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| T |
12557318 |
gggagagaaattaagaagatcagtgaactaggtaagagagaaatttttttaccaacaaacaagaaggtaaacacaaatagaagttacattaccgaatata |
12557417 |
T |
|
| Q |
301 |
gttacaaacattataaccctagagtcatgaaaagaagtcttagcttcttacattagccaaataaataaaagtcagcattgtactactacaaaaaactaac |
400 |
Q |
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| T |
12557418 |
gttacaaacattataaccctagagtcatgaaaagaagtcttagcttcttacattagc-----------------gcattgtactactacaaaaaactaag |
12557500 |
T |
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| Q |
401 |
tttgcataactgaaaatcatgaaatttcacaagaaacaggaacaaatgaattatacaataacagttactggttgacaatacagaaaaatggtgtc-tcac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
12557501 |
tttgcataactgaaaatcatgaaatttcacaagaaacaggaataaatgaattataaaataacagttactggttgacaatacagaaaaacggtgtcttcac |
12557600 |
T |
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| Q |
500 |
ttgtggggaagtttaacaattttttgtaaaaccacggtccttgctctgatgatgtc |
555 |
Q |
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| T |
12557601 |
ttgtggggaagtttaacaattttttgtagtaccacggtccttgctcttatgatgtc |
12557656 |
T |
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