View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_143 (Length: 250)
Name: NF3772_high_143
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_143 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38739433 - 38739666
Alignment:
| Q |
1 |
acaaaaaaggaaagttgaatataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtgatatatgaaaggatgg |
100 |
Q |
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| T |
38739433 |
acaaaaaaggaaagttgaatataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtgatatatgaaaggatgg |
38739532 |
T |
|
| Q |
101 |
ttactttggagtatatattacatgagaaaataaagaaaatccctgtataatattttgccaatcgagtgaaaagagaagtaacttttttgtttcggaatgg |
200 |
Q |
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| T |
38739533 |
ttactttggagtatatattacatgagaaaataaagaaaatccctgtataatattttgccaatcgaatgaaaagagaagtaacttttttgtttcggaatgg |
38739632 |
T |
|
| Q |
201 |
aggtgaatgttagaaattgtcttcacctcacaag |
234 |
Q |
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| T |
38739633 |
aggtgaatgttagaaattgtctccacctcacaag |
38739666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 38744120 - 38744280
Alignment:
| Q |
19 |
atataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtgatatatgaaaggatggttactttggagtatatat |
118 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||||| |||| ||||||||||||||| || || || ||||| ||||||||||| || |
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| T |
38744120 |
atataaagaggcaatagaggacaataaggaactgacagcaaaagataaaattgagagacaaatgtgacatttg-aatgatgg----tttggagtatacat |
38744214 |
T |
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| Q |
119 |
tac-atgagaaaataaagaaa---atccctgtataatattttgccaatcgagtgaaaagagaagta |
180 |
Q |
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||| |||||||||| |||||| ||||||||| |||||| || || || | |||||||||||||| |
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| T |
38744215 |
tacaatgagaaaatgaagaaaatgatccctgtagaatattctgtcattcaaatgaaaagagaagta |
38744280 |
T |
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