View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_146 (Length: 250)
Name: NF3772_high_146
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_146 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 41244122 - 41243973
Alignment:
| Q |
16 |
atcagtaatcaagaaattatttgataggtgccaaaatttgaaaaacataatgtactaatgtctcttaaatgtaataatcttataaaggaaggaaaatttt |
115 |
Q |
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| T |
41244122 |
atcagtaatcaagaaattatttgataggtgccaaaatttgaaaaacataatgtactaatgtctcttaaatgtaataatcttataaaggaaggaaaaactt |
41244023 |
T |
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| Q |
116 |
gattttcacctttgaaaagtcacagccactacttaatttagaactaaatg |
165 |
Q |
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| T |
41244022 |
gattttcacctttgaaaagtcacagccactacttaatttagaactaaatg |
41243973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 41243914 - 41243845
Alignment:
| Q |
180 |
gttgtcaaatagtctagcggctagagaaattcactgaataagtagggttcgaacttcgaccccttgcatat |
250 |
Q |
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| T |
41243914 |
gttgtcaaatagtctagtgactagagaaattcattgaataagta-ggttcgaacttcgaccccttgcatat |
41243845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 33342793 - 33342825
Alignment:
| Q |
181 |
ttgtcaaatagtctagcggctagagaaattcac |
213 |
Q |
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| T |
33342793 |
ttgtcaagtagtctagcggctagagaaattcac |
33342825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 5641664 - 5641696
Alignment:
| Q |
181 |
ttgtcaaatagtctagcggctagagaaattcac |
213 |
Q |
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| T |
5641664 |
ttgtcaagtagtctagcggctagagaaattcac |
5641696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 36590516 - 36590484
Alignment:
| Q |
181 |
ttgtcaaatagtctagcggctagagaaattcac |
213 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
36590516 |
ttgtcaaatagtctagtggctagagaaattcac |
36590484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 37592196 - 37592228
Alignment:
| Q |
181 |
ttgtcaaatagtctagcggctagagaaattcac |
213 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
37592196 |
ttgtcaagtagtctagcggctagagaaattcac |
37592228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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