View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_151 (Length: 248)
Name: NF3772_high_151
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_151 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 46078393 - 46078629
Alignment:
| Q |
5 |
aaaatgaggatggaactgtgtatgtcctaattgtgacactgcctcaatcaagaaactatagtgttgttgtaactaaggtccaaccttgttgagtatgtct |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46078393 |
aaaatgaggatggaactgtgtatgtcctaattgtgacactgtctcaatcaagaaactatagtgttgttgtaactaaggtccaaccttgttgagtatgtct |
46078492 |
T |
|
| Q |
105 |
atttgatgggatttttctcataaggaaatgcttatcaattactcttaccagctatttgcatgacatagtgacaactactacgccatcatgttaattagtt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46078493 |
atttgatgggatttttctcataaggaaatgcttatcaattactcttaccagctatttgcatgacatagtcacaactactacgccatcatgttaattagtt |
46078592 |
T |
|
| Q |
205 |
gcctctactaatggaactgataaatgtcatctctctg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46078593 |
gcctctactaatggaactgataaatgtcatctctctg |
46078629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University