View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_152 (Length: 247)
Name: NF3772_high_152
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_152 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 11174017 - 11174244
Alignment:
| Q |
13 |
agttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaa |
112 |
Q |
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| T |
11174017 |
agttacagcaatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgtccagtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaa |
11174116 |
T |
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| Q |
113 |
aaataatcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcc |
212 |
Q |
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| T |
11174117 |
aaataatcaaagcttgtaatagtttttaaacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcc |
11174216 |
T |
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| Q |
213 |
cggctccacctcagccacccactctctg |
240 |
Q |
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| T |
11174217 |
cggctccacctcagccacccactctctg |
11174244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 30221488 - 30221417
Alignment:
| Q |
144 |
atacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccgg |
215 |
Q |
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| T |
30221488 |
atacctgaagcgaattctcttgagatcatttccaccattaggaagagacacaaaggtaatatgaacccccgg |
30221417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 19006024 - 19005929
Alignment:
| Q |
141 |
aacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc |
236 |
Q |
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| T |
19006024 |
aacatacttgaagtgaattcttcttagatcatttccaccaataagaagatacacaaagataacatcagcccctggctccacctatgccacccactc |
19005929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 18968504 - 18968434
Alignment:
| Q |
166 |
agatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc |
236 |
Q |
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| T |
18968504 |
agatcatttccaccattaggaagagagacaaagataacatcaacccctcgctccacctgcgccaaccactc |
18968434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 5453715 - 5453671
Alignment:
| Q |
41 |
agtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtca |
85 |
Q |
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| T |
5453715 |
agtgtctacgtgttagtgttgtgtttggtgtttgtgtatgtgtca |
5453671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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