View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_154 (Length: 247)
Name: NF3772_high_154
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_154 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 1972837 - 1973021
Alignment:
| Q |
11 |
caaaggaacatgtttggtatgattcccaccgatcccaaatcctcatctcagatctggtggttgaaattgaaggtggaggttgctgacaaaggcggcgaat |
110 |
Q |
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| T |
1972837 |
caaaggaatatgtttggtataattcccaccgatcctaaatcatcgtctcagatctggcggttgaatttgaaggtggaggttgttgacagaggcggcgaat |
1972936 |
T |
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| Q |
111 |
gacggtgacggcatggtgatggaagggagtcatgtgagaaggagagtgagaatagccacgttgtggctgtctccggcgatggcag |
195 |
Q |
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| T |
1972937 |
gacggtgacgacatggtgatggaagagagtcacatgagaaggagagtgagaacaaccactttgtggctgtcgtcggcgatggcag |
1973021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 12048734 - 12048884
Alignment:
| Q |
42 |
atcccaaatcctcatctcagatctggtggttgaaattgaaggtggaggttgctgacaaaggcggcgaatgacggtgacggcatggtgatggaagggagtc |
141 |
Q |
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| T |
12048734 |
atcccaaatcctcatcttagatctggaggttgaatttgaaggtggatgttgctggtagaggtggcgaataatggtgacggcatggtgatggatgagagtc |
12048833 |
T |
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| Q |
142 |
atgtgagaaggagagtgagaatagccacgttgtggctgtctccggcgatgg |
192 |
Q |
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| T |
12048834 |
acgtgagaaggagagtgagaacagccaggttgtggctgtcgccgacgatgg |
12048884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 48333750 - 48333567
Alignment:
| Q |
11 |
caaaggaacatgtttggtatgattcccaccgatcccaaatcctcatctcagatctggtggttgaaattgaaggtggaggttgctgacaaaggcggcgaat |
110 |
Q |
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| T |
48333750 |
caaagtaacatgtttggtataattcccaccgatcctaattcctcatctcagatctggtggttgaatttgaaggtggaggttgttgacagaggcggcgaat |
48333651 |
T |
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| Q |
111 |
gacggtgacggcatggtgatggaagggagtcatgtgagaaggagagtgagaatagccacgttgtggctgtctccggcgatggcag |
195 |
Q |
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| T |
48333650 |
gacgatgacgacat-gtgatggaagagagtcacgtgagaaggagagtgagaacagccactttgtggctgtcgtcgacgatggcag |
48333567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 26864904 - 26864810
Alignment:
| Q |
101 |
ggcggcgaatgacggtgacggcatggtgatggaagggagtcatgtgagaaggagagtgagaatagccacgttgtggctgtctccggcgatggcag |
195 |
Q |
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| T |
26864904 |
ggcggcgaatgacggtgacggcatggtgatggaagagagtcacgtgagaaggagagcgagaacagccacgttgtggccgtcgtcggcgatggcag |
26864810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 20723427 - 20723378
Alignment:
| Q |
101 |
ggcggcgaatgacggtgacggcatggtgatggaagggagtcatgtgagaa |
150 |
Q |
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| T |
20723427 |
ggcggtgaatgacggtgatggcatggtgatggaagagagtcacgtgagaa |
20723378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 46106384 - 46106223
Alignment:
| Q |
31 |
gattcccaccgatcccaaatcctcatctcagatctggtggttgaaattgaaggtggaggttgctgacaaaggcggcgaatgacggtgacggcatggtgat |
130 |
Q |
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| T |
46106384 |
gattccaaccaatcccaaatcctcatcttagatctggaggttgaatttgaaggtggatgttgctgatagaggcgacgaatgtcggtgacggcatggtgat |
46106285 |
T |
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| Q |
131 |
ggaagggagtcatgtgagaaggagagtgagaatagccacgttgtggctgtctccggcgatgg |
192 |
Q |
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| T |
46106284 |
ggaagagagtcacatgagaaggagagtgagaacagccacgttgtggccgtcgccgacgatgg |
46106223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 12067371 - 12067439
Alignment:
| Q |
101 |
ggcggcgaatgacggtgacggcatggtgatggaagggagtcatgtgagaaggagagtgagaatagccac |
169 |
Q |
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| T |
12067371 |
ggcggcgaatgacggtgacgacatggtgatggaagagagtctcgtgagaaggagagtgagaacagccac |
12067439 |
T |
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