View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_164 (Length: 243)
Name: NF3772_high_164
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_164 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 101219 - 101444
Alignment:
| Q |
1 |
caatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaatcatttcatactcctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101219 |
caatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaatcatttcatactcctttt |
101318 |
T |
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| Q |
101 |
tgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcctttcaattcaattcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101319 |
tgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcctttcaattcaattcttata |
101418 |
T |
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| Q |
201 |
tatatgtctcaagtacagattctagt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
101419 |
tatatgtctcaagtacagattctagt |
101444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41121930 - 41121705
Alignment:
| Q |
1 |
caatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaatcatttcatactcctttt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121930 |
caatctaaggttatcaacttactaaacatgtttttataattggtcatttggtctaaagataatgaccctcgacaataatcaatcatttcatactcctttt |
41121831 |
T |
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| Q |
101 |
tgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcctttcaattcaattcttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121830 |
tgttttattcatccaacactatcacctcaagtgaataggacttatcaaataataataggtaaccataccatgcatgtatcctttcaattcaattcttata |
41121731 |
T |
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| Q |
201 |
tatatgtctcaagtacagattctagt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41121730 |
tatatgtctcaagtacagattctagt |
41121705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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