View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_171 (Length: 240)
Name: NF3772_high_171
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_171 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11173784 - 11174006
Alignment:
| Q |
18 |
agcttggctattgaaactccggacattataaagctccctgagtctgtcaaaattctcaccccaccagactctagcttgccacttatcaaagatttctcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
11173784 |
agcttggctattgaaactccggacattataaagctccctgagtctgtcaaaattctcaccccaccatactctagcttgccacttatcaaagatttcgcga |
11173883 |
T |
|
| Q |
118 |
cttcacatttaaatattaagcaataagtattgttacaactaaattatgagacgtaaactaaacctacgtagcaccgacacttcaaattgaagacgtgttt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11173884 |
cttcacatttaaatgttaagcaataagtattgttacaactaaattatgagacgtaaactaaacctacgtagcactgacacttcaaattgaagacgtgttt |
11173983 |
T |
|
| Q |
218 |
ggtatctgataccaatacgacac |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11173984 |
ggtatctgataccaatacgacac |
11174006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 4628293 - 4628324
Alignment:
| Q |
185 |
gtagcaccgacacttcaaattgaagacgtgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4628293 |
gtagcaccgacacttcaaattgaagacgtgtt |
4628324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 10794645 - 10794610
Alignment:
| Q |
181 |
ctacgtagcaccgacacttcaaattgaagacgtgtt |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10794645 |
ctacgtagcaccgacacttcatattgaagacgtgtt |
10794610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 36348619 - 36348651
Alignment:
| Q |
185 |
gtagcaccgacacttcaaattgaagacgtgttt |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
36348619 |
gtagcaccgacacttcaaattgaagtcgtgttt |
36348651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 10214988 - 10214960
Alignment:
| Q |
185 |
gtagcaccgacacttcaaattgaagacgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10214988 |
gtagcaccgacacttcaaattgaagacgt |
10214960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University