View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_177 (Length: 239)
Name: NF3772_high_177
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_177 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 31140552 - 31140329
Alignment:
| Q |
18 |
caataggacaatctgactattgcctgcaaacttccggtggttgtagtcggatggttctaacttgattacaggcgtgttcaattaccatatgttattacac |
117 |
Q |
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| T |
31140552 |
caataggacaatctgactattgcctgcaaacttccggtggttgtagtcggatggttctaacttgattacaggcgtgttcaattaccatatgttattacac |
31140453 |
T |
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| Q |
118 |
tgtcagttgttggaaaaaataggagnnnnnnnnnnnnnatttaaatttgtaattcttaatctatgtataacatatctcagagacagactctaattaagtc |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31140452 |
tgtcagttgttggaaaaaataggagtttttatttttttatttaaatttgtaattcttaatctatgtataacatatctcagagacagactctaatcaagtc |
31140353 |
T |
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| Q |
218 |
attt--gagttaaggaatgagctc |
239 |
Q |
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|||| |||||||||||||||||| |
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| T |
31140352 |
attttagagttaaggaatgagctc |
31140329 |
T |
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