View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_178 (Length: 238)

Name: NF3772_high_178
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_178
NF3772_high_178
[»] chr8 (3 HSPs)
chr8 (16-238)||(9572705-9572927)
chr8 (88-137)||(6950208-6950257)
chr8 (105-137)||(29972965-29972997)
[»] chr6 (2 HSPs)
chr6 (97-140)||(32408827-32408870)
chr6 (91-135)||(30004777-30004821)
[»] chr7 (2 HSPs)
chr7 (96-137)||(753353-753394)
chr7 (103-135)||(47303647-47303679)
[»] chr4 (2 HSPs)
chr4 (96-135)||(24929373-24929412)
chr4 (98-135)||(8422988-8423025)
[»] chr3 (3 HSPs)
chr3 (97-136)||(43116578-43116617)
chr3 (150-196)||(28306128-28306174)
chr3 (91-135)||(37308216-37308260)
[»] chr2 (1 HSPs)
chr2 (97-135)||(9477860-9477898)
[»] chr5 (4 HSPs)
chr5 (150-207)||(9703283-9703340)
chr5 (134-194)||(41016132-41016193)
chr5 (148-196)||(14257433-14257481)
chr5 (97-141)||(39257531-39257575)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 9572705 - 9572927
Alignment:
Q  16 cagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgcaagtaacacaacaagaacattttaggcactgtttcgataaacaactta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572705 cagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgcaagtaacacaacaagaacattttaggcactgtttcgataaacaactta 9572804  T
Q  116 attgagtgtttatagcataaactatttcaataacaaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttctagaaagcgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9572805 attgagtgtttatagcataaactatttcaataacaaaataaattcaaactgttctcatataaggtacaagttgttttcataggttatttctagaaagcgt 9572904  T
Q  216 atagatataaggtaaaaacaact 238  Q
    |||||||||||||||||||||||    
T  9572905 atagatataaggtaaaaacaact 9572927  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 6950208 - 6950257
Alignment:
Q  88 tttaggcactgtttcgataaacaacttaattgagtgtttatagcataaac 137  Q
    |||||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  6950208 tttaggcattgtttagataaacaacttaattaagtgcttatagcataaac 6950257  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 29972965 - 29972997
Alignment:
Q  105 taaacaacttaattgagtgtttatagcataaac 137  Q
    |||||||||||||||||||||||||||||||||    
T  29972965 taaacaacttaattgagtgtttatagcataaac 29972997  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 32408827 - 32408870
Alignment:
Q  97 tgtttcgataaacaacttaattgagtgtttatagcataaactat 140  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  32408827 tgtttcgataaacaacttaattaagtgtttatagcataaactat 32408870  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 30004777 - 30004821
Alignment:
Q  91 aggcactgtttcgataaacaacttaattgagtgtttatagcataa 135  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||    
T  30004777 aggctctgtttggataaacaatttaattgagtgcttatagcataa 30004821  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 753394 - 753353
Alignment:
Q  96 ctgtttcgataaacaacttaattgagtgtttatagcataaac 137  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  753394 ctgtttggataaacaacttaattaagtgtttatagcataaac 753353  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 47303679 - 47303647
Alignment:
Q  103 gataaacaacttaattgagtgtttatagcataa 135  Q
    |||||||||||||||||||||||||||| ||||    
T  47303679 gataaacaacttaattgagtgtttatagtataa 47303647  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 24929373 - 24929412
Alignment:
Q  96 ctgtttcgataaacaacttaattgagtgtttatagcataa 135  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  24929373 ctgtttggataaacaacttaattgagtgtttataacataa 24929412  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 8423025 - 8422988
Alignment:
Q  98 gtttcgataaacaacttaattgagtgtttatagcataa 135  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 43116617 - 43116578
Alignment:
Q  97 tgtttcgataaacaacttaattgagtgtttatagcataaa 136  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  43116617 tgtttggataaacaacttaatttagtgtttatagcataaa 43116578  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 28306128 - 28306174
Alignment:
Q  150 aaaataaattcaaactgttcccatataaggtacaagttgttttcata 196  Q
    |||||||| ||||||||||  |||||||| |||||||||||||||||    
T  28306128 aaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 37308260 - 37308216
Alignment:
Q  91 aggcactgtttcgataaacaacttaattgagtgtttatagcataa 135  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||    
T  37308260 aggccctgtttggataaacaacttaattaagtgcttatagcataa 37308216  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 9477860 - 9477898
Alignment:
Q  97 tgtttcgataaacaacttaattgagtgtttatagcataa 135  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataa 9477898  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 9703340 - 9703283
Alignment:
Q  150 aaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttcta 207  Q
    |||||||| |||||||  |  |||||||| ||||||||||||||||| ||||||||||    
T  9703340 aaaataaagtcaaactcatttcatataagctacaagttgttttcataagttatttcta 9703283  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 41016132 - 41016193
Alignment:
Q  134 aaactatttcaataacaaaa-taaattcaaactgttcccatataaggtacaagttgttttca 194  Q
    |||||||||| ||| ||||| |||||||||||||||  |||||||| || ||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctataagttgttttca 41016193  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 14257433 - 14257481
Alignment:
Q  148 acaaaataaattcaaactgttcccatataaggtacaagttgttttcata 196  Q
    |||||||||||||||| |||| ||||||||| || ||| ||||||||||    
T  14257433 acaaaataaattcaaaatgtttccatataagttataaggtgttttcata 14257481  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 39257575 - 39257531
Alignment:
Q  97 tgtttcgataaacaacttaattgagtgtttatagcataaactatt 141  Q
    ||||| |||||||||||||||| || | |||||||||||||||||    
T  39257575 tgtttggataaacaacttaattaagcgcttatagcataaactatt 39257531  T

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