View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_179 (Length: 238)
Name: NF3772_high_179
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_179 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38731194 - 38731414
Alignment:
| Q |
18 |
atatcgtatcataatatcaaatatgatagatacagagaacatgagtaacatatagtgcaggtgtttcctaggagctgctggccgtggaagggtcaaggtc |
117 |
Q |
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| T |
38731194 |
atatcgtatcataatatcaaatatgatagatacagagaacatgagtaacatatagtgcaggtgtttcctaggagctgctggccgtggaagggtcaaggtc |
38731293 |
T |
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| Q |
118 |
gtgtttgtgttctttgtttatacttttgtttactaattaagtggaagcttgtcaggcttggatcattatgtttttcaaaattttatggacggcaagttca |
217 |
Q |
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| T |
38731294 |
gtgtttgtgttctttgtttatacttttgtttactaactaagtggaagcttgtcaggcttggatcattatgtttttcaaaattttatggacggcaagttca |
38731393 |
T |
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| Q |
218 |
taccttaaaatatattccctc |
238 |
Q |
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| T |
38731394 |
taccttaaaatatattccctc |
38731414 |
T |
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