View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_181 (Length: 238)

Name: NF3772_high_181
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_181
NF3772_high_181
[»] chr2 (30 HSPs)
chr2 (1-136)||(40780657-40780792)
chr2 (1-135)||(43208675-43208809)
chr2 (1-135)||(37280462-37280596)
chr2 (1-136)||(31586688-31586824)
chr2 (1-136)||(25960455-25960590)
chr2 (1-135)||(9186209-9186343)
chr2 (9-135)||(9189446-9189572)
chr2 (1-135)||(25955819-25955953)
chr2 (1-135)||(24237554-24237688)
chr2 (1-135)||(30148608-30148743)
chr2 (1-135)||(11348660-11348794)
chr2 (1-135)||(8887842-8887976)
chr2 (1-135)||(24234282-24234416)
chr2 (1-135)||(25957229-25957363)
chr2 (25-136)||(42369509-42369621)
chr2 (1-101)||(1387187-1387287)
chr2 (20-101)||(37938002-37938084)
chr2 (14-101)||(40259936-40260025)
chr2 (95-136)||(5665829-5665870)
chr2 (95-136)||(43722903-43722944)
chr2 (95-135)||(13972773-13972813)
chr2 (95-135)||(38014636-38014676)
chr2 (96-136)||(45494029-45494069)
chr2 (96-136)||(45501771-45501811)
chr2 (97-136)||(25869834-25869873)
chr2 (97-135)||(25873203-25873241)
chr2 (50-100)||(27266007-27266057)
chr2 (95-135)||(6825974-6826014)
chr2 (95-135)||(10599951-10599991)
chr2 (95-135)||(31430598-31430638)
[»] chr1 (21 HSPs)
chr1 (1-135)||(45940621-45940755)
chr1 (9-136)||(28110282-28110409)
chr1 (1-135)||(37184649-37184783)
chr1 (1-135)||(23022708-23022843)
chr1 (1-135)||(3797589-3797724)
chr1 (29-135)||(20398067-20398173)
chr1 (94-138)||(42021718-42021762)
chr1 (45-100)||(906517-906572)
chr1 (1-100)||(673773-673875)
chr1 (94-135)||(2404722-2404763)
chr1 (136-176)||(9243425-9243465)
chr1 (97-135)||(41059196-41059234)
chr1 (98-136)||(49147112-49147150)
chr1 (98-135)||(21019330-21019367)
chr1 (136-176)||(9336713-9336753)
chr1 (136-176)||(9363620-9363660)
chr1 (96-135)||(47708778-47708817)
chr1 (98-136)||(22460406-22460444)
chr1 (95-136)||(21108353-21108394)
chr1 (1-33)||(20398179-20398211)
chr1 (95-135)||(45961667-45961707)
[»] chr7 (14 HSPs)
chr7 (1-135)||(37166936-37167070)
chr7 (1-136)||(11951182-11951317)
chr7 (1-135)||(23225695-23225830)
chr7 (1-135)||(23234848-23234983)
chr7 (25-135)||(4860992-4861104)
chr7 (23-101)||(20593502-20593581)
chr7 (14-100)||(9133519-9133607)
chr7 (95-135)||(4596884-4596924)
chr7 (95-135)||(9865602-9865642)
chr7 (95-135)||(45288098-45288138)
chr7 (95-135)||(45291434-45291474)
chr7 (95-136)||(9080375-9080416)
chr7 (45-86)||(9405516-9405557)
chr7 (95-136)||(20081600-20081641)
[»] chr6 (18 HSPs)
chr6 (1-135)||(11188701-11188835)
chr6 (1-135)||(30654648-30654783)
chr6 (1-135)||(28229800-28229934)
chr6 (6-135)||(2378435-2378564)
chr6 (1-135)||(15543215-15543349)
chr6 (1-116)||(11730120-11730235)
chr6 (11-135)||(26943221-26943345)
chr6 (16-100)||(13941803-13941888)
chr6 (16-101)||(19475242-19475328)
chr6 (59-136)||(3597506-3597583)
chr6 (1-57)||(11401540-11401596)
chr6 (45-100)||(4511738-4511793)
chr6 (15-100)||(11126494-11126581)
chr6 (95-135)||(10289186-10289226)
chr6 (95-135)||(28666136-28666176)
chr6 (98-135)||(12981151-12981188)
chr6 (45-86)||(26898699-26898740)
chr6 (96-136)||(22463514-22463554)
[»] chr8 (16 HSPs)
chr8 (1-136)||(16952997-16953132)
chr8 (12-101)||(23593337-23593427)
chr8 (42-135)||(17895432-17895527)
chr8 (16-100)||(8910886-8910971)
chr8 (14-101)||(31283904-31283993)
chr8 (14-100)||(33418868-33418956)
chr8 (19-101)||(21280570-21280654)
chr8 (15-100)||(13196082-13196169)
chr8 (96-135)||(31984107-31984146)
chr8 (45-101)||(10499033-10499089)
chr8 (25-100)||(17930254-17930330)
chr8 (15-100)||(2559822-2559910)
chr8 (95-136)||(12582217-12582258)
chr8 (95-136)||(18826794-18826835)
chr8 (97-135)||(10663011-10663049)
chr8 (92-137)||(30640503-30640548)
[»] chr4 (25 HSPs)
chr4 (1-136)||(38284281-38284416)
chr4 (1-136)||(24149895-24150030)
chr4 (1-135)||(34018565-34018699)
chr4 (1-135)||(48636709-48636843)
chr4 (1-135)||(39494559-39494693)
chr4 (1-135)||(39500872-39501006)
chr4 (1-135)||(48416314-48416448)
chr4 (9-135)||(52531707-52531833)
chr4 (20-101)||(25961329-25961411)
chr4 (20-101)||(40494148-40494230)
chr4 (65-135)||(40617754-40617824)
chr4 (15-100)||(11194912-11194999)
chr4 (16-100)||(30391809-30391895)
chr4 (95-135)||(19826701-19826741)
chr4 (95-135)||(52007391-52007431)
chr4 (97-135)||(27013229-27013267)
chr4 (95-136)||(12782105-12782146)
chr4 (95-136)||(44809864-44809905)
chr4 (95-135)||(19819950-19819990)
chr4 (95-135)||(29323979-29324019)
chr4 (97-136)||(15431163-15431202)
chr4 (97-136)||(15437777-15437816)
chr4 (97-135)||(24045019-24045057)
chr4 (95-135)||(3718336-3718376)
chr4 (95-127)||(40794200-40794232)
[»] chr5 (22 HSPs)
chr5 (1-135)||(41307311-41307445)
chr5 (1-135)||(26753486-26753620)
chr5 (1-136)||(41877549-41877684)
chr5 (34-136)||(34830976-34831078)
chr5 (1-135)||(12087152-12087296)
chr5 (6-101)||(12059281-12059377)
chr5 (16-100)||(26908181-26908266)
chr5 (16-100)||(40582487-40582572)
chr5 (15-100)||(23043423-23043510)
chr5 (16-95)||(26292114-26292195)
chr5 (97-135)||(21828003-21828041)
chr5 (95-136)||(25329455-25329496)
chr5 (95-135)||(7270241-7270281)
chr5 (95-135)||(14016996-14017036)
chr5 (95-135)||(17747617-17747657)
chr5 (95-135)||(28788361-28788401)
chr5 (97-135)||(21336704-21336742)
chr5 (95-133)||(39191333-39191371)
chr5 (97-135)||(40916851-40916889)
chr5 (47-100)||(18952000-18952053)
chr5 (98-135)||(25329511-25329548)
chr5 (95-135)||(30065562-30065602)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-135)||(18599-18733)
[»] chr3 (45 HSPs)
chr3 (6-135)||(43926124-43926253)
chr3 (1-136)||(24124785-24124921)
chr3 (1-135)||(2778015-2778149)
chr3 (1-135)||(11189827-11189961)
chr3 (1-135)||(25583982-25584115)
chr3 (1-135)||(49743691-49743825)
chr3 (1-135)||(24128063-24128198)
chr3 (1-136)||(54723029-54723164)
chr3 (9-135)||(2774793-2774919)
chr3 (1-135)||(2872853-2872987)
chr3 (1-135)||(12535843-12535977)
chr3 (6-136)||(50462326-50462456)
chr3 (1-135)||(7485860-7485994)
chr3 (1-135)||(30690025-30690158)
chr3 (25-135)||(45895658-45895769)
chr3 (36-135)||(8462458-8462558)
chr3 (1-101)||(12562004-12562104)
chr3 (26-135)||(28264992-28265101)
chr3 (16-100)||(46985933-46986018)
chr3 (42-135)||(6445576-6445671)
chr3 (16-100)||(17140753-17140838)
chr3 (16-100)||(54719369-54719454)
chr3 (1-101)||(48064785-48064886)
chr3 (14-101)||(52987727-52987816)
chr3 (95-134)||(9380012-9380051)
chr3 (47-101)||(28008866-28008920)
chr3 (16-93)||(32288111-32288189)
chr3 (94-135)||(41976321-41976362)
chr3 (95-136)||(53814970-53815011)
chr3 (95-135)||(16243166-16243206)
chr3 (95-135)||(34984718-34984758)
chr3 (95-135)||(54460367-54460407)
chr3 (97-136)||(538014-538053)
chr3 (16-100)||(15196088-15196174)
chr3 (97-136)||(20729439-20729478)
chr3 (97-135)||(10884018-10884056)
chr3 (97-135)||(23299515-23299553)
chr3 (95-136)||(10880775-10880816)
chr3 (55-100)||(17040849-17040894)
chr3 (45-86)||(46884288-46884329)
chr3 (14-100)||(27091212-27091300)
chr3 (99-135)||(29344737-29344773)
chr3 (99-135)||(31857055-31857091)
chr3 (1-33)||(45895771-45895803)
chr3 (95-127)||(54736810-54736842)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-135)||(30298-30432)
[»] scaffold0427 (1 HSPs)
scaffold0427 (17-135)||(4594-4712)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-101)||(24059-24160)
[»] scaffold0084 (2 HSPs)
scaffold0084 (6-101)||(18626-18722)
scaffold0084 (6-101)||(28602-28698)
[»] scaffold0321 (1 HSPs)
scaffold0321 (16-101)||(3737-3823)
[»] scaffold0014 (1 HSPs)
scaffold0014 (96-135)||(226465-226504)
[»] scaffold0381 (1 HSPs)
scaffold0381 (97-135)||(6516-6554)
[»] scaffold0757 (1 HSPs)
scaffold0757 (95-136)||(4562-4603)
[»] scaffold0520 (1 HSPs)
scaffold0520 (95-135)||(4840-4880)
[»] scaffold1026 (1 HSPs)
scaffold1026 (96-135)||(2562-2601)
[»] scaffold0567 (1 HSPs)
scaffold0567 (96-135)||(7016-7055)
[»] scaffold0270 (3 HSPs)
scaffold0270 (95-136)||(4380-4421)
scaffold0270 (95-136)||(11510-11551)
scaffold0270 (95-135)||(1020-1060)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 40780792 - 40780657
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40780792 cgtgacacgattctcttctttgtattttcttcagttttctactcatttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 40780693  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  40780692 agactctaaaaatagcgaatgattgactgtcatcaa 40780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 43208675 - 43208809
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43208675 cgtgacacgattctcttctttgtattttcttcaattttctactcttttgttgcataagttgccatgtgaactccaatttgtgatcaaaatacatataaaa 43208774  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  43208775 agactctaaaaatagcgaatgactgactgtcatca 43208809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37280462 - 37280596
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37280462 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgttgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 37280561  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  37280562 agactctaaaaatagcgaatgactgactgtcatca 37280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31586688 - 31586824
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat-aaa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  31586688 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 31586787  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31586788 aagactctaaaaatagcgaatgactgactgtcatcaa 31586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 25960455 - 25960590
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  25960455 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcatcagttgccttgtgaactccaatttgtgatcaaactacatataaaa 25960554  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25960555 agactctaaaaatagcgaatgatggactgtcatcaa 25960590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 9186209 - 9186343
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9186209 cgtgacacgattctcttctttgtattttcttcagttttctactctttggctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 9186308  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| | ||||||||||    
T  9186309 agactctaaaaatagcgaatgactaactgtcatca 9186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 9189446 - 9189572
Alignment:
Q  9 gattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactcta 108  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9189446 gattctcttctttgtattttcttcagttttctactctttggctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaagactcta 9189545  T
Q  109 aaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||| ||||||||||||    
T  9189546 aaaatagcgaatgactgactgtcatca 9189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25955953 - 25955819
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  25955953 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaactacatataaaa 25955854  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  25955853 agactctaaaaatagcgaatgaaggactgtcatca 25955819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24237688 - 24237554
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24237688 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 24237589  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| ||||||||||||  |||||||||||    
T  24237588 agactctaagaatagcgaatgacggactgtcatca 24237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30148743 - 30148608
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  30148743 cgtggcacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 30148644  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| |||||||||||||  |||||||||||    
T  30148643 aagactctagaaatagcgaatgacggactgtcatca 30148608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 11348660 - 11348794
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11348660 cgtgacacgattctgttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 11348759  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| || ||||||||||  |||||||||||    
T  11348760 agactctagaattagcgaatgacggactgtcatca 11348794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8887976 - 8887842
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  8887976 cgtgacacgattctcttgtttgtatttttttcagttttctactcttttgctgcataagttgacttgtgaactccaatttgtgatcaaactacatataaaa 8887877  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  8887876 agactctaaaaatagcgaatgacggactgtcatca 8887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24234416 - 24234282
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  24234416 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccactttgtgatcaaaatatatataaaa 24234317  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| |||||||||| |  |||||||||||    
T  24234316 agactctaagaatagcgaatcacggactgtcatca 24234282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 25957229 - 25957363
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||    
T  25957229 cgtgacacgattctcttctttgttttttcttcagttttctactcttttgctacagaagttgccttgtgaactccaatttgtgatcaaactacatataaaa 25957328  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  25957329 agactctaaaaatagcgaatgacggactgtcatca 25957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 42369509 - 42369621
Alignment:
Q  25 ttttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat-aaaaagactctaaaaatagcgaatgat 123  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||     
T  42369509 ttttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaaagactctagaaatagcgaatgac 42369608  T
Q  124 tgactgtcatcaa 136  Q
     ||||||||||||    
T  42369609 ggactgtcatcaa 42369621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1387187 - 1387287
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  1387187 cgtgacacgatttccttctttgtattttcttcatttttctgctcttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 1387286  T
Q  101 a 101  Q
    |    
T  1387287 a 1387287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 37938002 - 37938084
Alignment:
Q  20 ttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||| |||||  ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  37938002 ttgtattttcttcagttttccgctctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaaa 37938084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 40259936 - 40260025
Alignment:
Q  14 tcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    ||||||||||||||||| || |||| || ||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  40259936 tcttctttgtattttctccagtttttctgctctttttgctacataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 40260025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 5665870 - 5665829
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5665870 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 5665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 43722944 - 43722903
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  43722944 ataaaaagactctaaaaataacgaatgattgactgtcatcaa 43722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 13972773 - 13972813
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  13972773 ataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 38014676 - 38014636
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  38014676 ataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 45494029 - 45494069
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  45494029 taaaaaaactctaaaaatagtgaatgattgactgtcatcaa 45494069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 45501771 - 45501811
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  45501771 taaaaaaactctaaaaatagtgaatgattgactgtcatcaa 45501811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 25869873 - 25869834
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  25869873 aaaaagactctaaaaatagtgaatgactgactgtcatcaa 25869834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 25873241 - 25873203
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  25873241 aaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 27266057 - 27266007
Alignment:
Q  50 ctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||  ||||||||||||  |||||||||| |||||||||||    
T  27266057 ctgcataagttgctttgtgaactccaaaatgtgatcaaattacatataaaa 27266007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 6826014 - 6825974
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||| |||| ||| ||||||||||||||||||||    
T  6826014 ataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 10599991 - 10599951
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| ||||||||||| |||||| ||||||||||||    
T  10599991 ataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 31430598 - 31430638
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| | ||||||||||    
T  31430598 ataaaaagactctaaaaatagcaaatgactaactgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 45940755 - 45940621
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45940755 cgtgacacgattctcttctttgtattttcttcaattttctattcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 45940656  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  45940655 agactctaaaaatagcgaatgactgactgtcatca 45940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 28110409 - 28110282
Alignment:
Q  9 gattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactcta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  28110409 gattctcttctttgtattttcttcaattttctactcttttgctgcataagttgacttgtgaactccaatttgtgatcaaactacatataaaaagactcta 28110310  T
Q  109 aaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||  ||||||||||||    
T  28110309 aaaatagcgaatgacggactgtcatcaa 28110282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37184649 - 37184783
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||    
T  37184649 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgacttatgaactccaatttgtgatcaaactacatataaaa 37184748  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  37184749 agactctaaaaatagcgaatgacggactgtcatca 37184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23022708 - 23022843
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaa-tttgtgatcaaaatacatataaa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  23022708 cgtgacacgattctcttctttgtattttcttcagttttctactattttgctgcataagtttccttgtgaactccaattttgtgatcaaaatacatataaa 23022807  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||| |||||||  |||||||||||    
T  23022808 aagactctaaaaataacgaatgacggactgtcatca 23022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 3797589 - 3797724
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat-aaa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||| |||    
T  3797589 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgttgcataagttgctttgtgaactccactttgtgatcaaaatacatataaaa 3797688  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    || ||||| ||||||||||||||  |||||||||||    
T  3797689 aaaactctcaaaatagcgaatgacggactgtcatca 3797724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 20398173 - 20398067
Alignment:
Q  29 cttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactctaaaaatagcgaatgattgact 128  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||  ||||    
T  20398173 cttcagttttcaactcttttgctgcataagttgccttgtgaactccactttgtgattaaaataaatataaaaagactctagaaatagcgaatgacggact 20398074  T
Q  129 gtcatca 135  Q
    |||||||    
T  20398073 gtcatca 20398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 42021762 - 42021718
Alignment:
Q  94 tataaaaagactctaaaaatagcgaatgattgactgtcatcaagt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42021762 tataaaaagactctaaaaatagcgaatgattgactgtcatcaagt 42021718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 906517 - 906572
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||    
T  906517 ttttgctgcataagtttccttgtgaattccaatttgtgatcaaaatacatataaaa 906572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 673773 - 673875
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaatttt--ctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata 97  Q
    |||| |||| || ||||||||| |||||||||||||||  || || || ||||||||||||||||  ||||||||||||  |||||||||| ||||||||    
T  673773 cgtgacacgtttttcttctttgcattttcttcaatttttcctgcttttcttgctgcataagttgctttgtgaactccaaaatgtgatcaaattacatata 673872  T
Q  98 aaa 100  Q
    |||    
T  673873 aaa 673875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 2404763 - 2404722
Alignment:
Q  94 tataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  2404763 tataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 9243465 - 9243425
Alignment:
Q  136 agtttctttgattgttcttcacaaggacaacgctatctaaa 176  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  9243465 agtttctttgattgttcttcactaggacaacgctatctaaa 9243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 41059196 - 41059234
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  41059196 aaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 49147150 - 49147112
Alignment:
Q  98 aaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  49147150 aaaagactctaaaaatagtgaatgattgactgtcatcaa 49147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 21019330 - 21019367
Alignment:
Q  98 aaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21019330 aaaagactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 9336713 - 9336753
Alignment:
Q  136 agtttctttgattgttcttcacaaggacaacgctatctaaa 176  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  9336713 agtttctttgattgttcttcacttggacaacgctatctaaa 9336753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 9363620 - 9363660
Alignment:
Q  136 agtttctttgattgttcttcacaaggacaacgctatctaaa 176  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  9363620 agtttctttgattgttcttcacttggacaacgctatctaaa 9363660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 47708778 - 47708817
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  47708778 taaaaagactctaaaaatagtgaatgactgactgtcatca 47708817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 22460406 - 22460444
Alignment:
Q  98 aaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  22460406 aaaagactctaaaaatagtgaatgactgactgtcatcaa 22460444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 21108353 - 21108394
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  21108353 ataagaagactctaaaaagagcgaatgactgactgtcatcaa 21108394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20398211 - 20398179
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttca 33  Q
    |||| ||||||||||||||||||||||||||||    
T  20398211 cgtggcacgattctcttctttgtattttcttca 20398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 45961667 - 45961707
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  45961667 ataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37166936 - 37167070
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  37166936 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgtcttgtgaactccaatttgtgatcaaaatacatataaaa 37167035  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  37167036 agactctaaaaatagcgaatgactgactgtcatca 37167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11951182 - 11951317
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  11951182 cgtgacacgattttcttctttgtattttcttcaattttctactcttttgctgcataagtttccttgtgaactcaaatttgtgatcaaaatacatataaaa 11951281  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||| |||||||  ||||||||||||    
T  11951282 agactctaaaaataacgaatgacggactgtcatcaa 11951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23225695 - 23225830
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttc-tactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaa 99  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23225695 cgtgacacgattctcttctttgtattttcttcagttttcctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaa 23225794  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| || ||||||||||  |||||||||||    
T  23225795 aagactctagaattagcgaatgacggactgtcatca 23225830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23234848 - 23234983
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttc-tactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaa 99  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23234848 cgtgacacgattctcttctttgtattttcttcagttttcctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaa 23234947  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| || ||||||||||  |||||||||||    
T  23234948 aagactctagaattagcgaatgacggactgtcatca 23234983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 4861104 - 4860992
Alignment:
Q  25 ttttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata--aaaagactctaaaaatagcgaatga 122  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  4861104 ttttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaaaagactctagaaatagcgaatga 4861005  T
Q  123 ttgactgtcatca 135  Q
      |||||||||||    
T  4861004 cggactgtcatca 4860992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 20593581 - 20593502
Alignment:
Q  23 tattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    ||||||||||| |||||| ||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  20593581 tattttcttcagttttctgctctttttgctgcataagttgtcttgtgaactccaaattgtgatcaaaatacatataaaaa 20593502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 9133519 - 9133607
Alignment:
Q  14 tcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||| | |||| || ||||||| || ||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  9133519 tcttctttgtattttcttaagtttttctgctctttttgcggcataagttaccttgtaaactccaatttgtgatcaaaatacatataaaa 9133607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 4596884 - 4596924
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  4596884 ataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 9865602 - 9865642
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  9865602 ataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 45288098 - 45288138
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  45288098 ataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 45291434 - 45291474
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  45291434 ataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 9080416 - 9080375
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||| ||||||| | |||||||||||    
T  9080416 ataaaaagactctaaaaataacgaatgactaactgtcatcaa 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9405557 - 9405516
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatca 86  Q
    ||||||||||||||| ||| |||||||||||| |||||||||    
T  9405557 ttttgctgcataagtggccttgtgaactccaaattgtgatca 9405516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 20081600 - 20081641
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||| ||||||||||||| |||||| |||||||||||||    
T  20081600 ataaaaacactctaaaaatagtgaatgactgactgtcatcaa 20081641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 11188701 - 11188835
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  11188701 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaactacatataaaa 11188800  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||| |||||||||||    
T  11188801 agactctaaaaatagcgaatgatggactgtcatca 11188835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30654783 - 30654648
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  30654783 cgtggcacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 30654684  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| |||||||||||||  |||||||||||    
T  30654683 aagactctagaaatagcgaatgacggactgtcatca 30654648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28229934 - 28229800
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  28229934 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgcagcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 28229835  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| ||||||||||||||  |||||||||||    
T  28229834 agactctcaaaatagcgaatgacggactgtcatca 28229800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 2378564 - 2378435
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagact 105  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  2378564 cacgattctcttctttgtattttcttcagtttcctactcttttgctgcataagttgccttgtgaactccaatatgtgatcaaactacatataaaaagact 2378465  T
Q  106 ctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||  |||||||||||    
T  2378464 ctaaaaatagcgaatgacggactgtcatca 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 15543349 - 15543215
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||| |||||||||||||||||||| |||||||||||||||    
T  15543349 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgtttcataggttgccttgtgaactccaatttgtgatgaaaatacatataaaa 15543250  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  15543249 agactctaaaaatagcgaatgacggactgtcatca 15543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11730120 - 11730235
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11730120 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgcagcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 11730219  T
Q  101 agactctaaaaatagc 116  Q
    |||||||| |||||||    
T  11730220 agactctagaaatagc 11730235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 26943221 - 26943345
Alignment:
Q  11 ttctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactctaaa 110  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||    
T  26943221 ttctcttctttgtattttcttcacttttccactcttttgcagcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaagaccctcaa 26943320  T
Q  111 aatagcgaatgattgactgtcatca 135  Q
    ||||||||||||  |||||| ||||    
T  26943321 aatagcgaatgacggactgtgatca 26943345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13941888 - 13941803
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  13941888 ttctttgtattttattcatttttctactctttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 13941803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 19475328 - 19475242
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  19475328 ttctttgtattttcttcagttttctgctctttttgttgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 19475242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 3597506 - 3597583
Alignment:
Q  59 ttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||  ||||||||||||    
T  3597506 ttgccttgtgaactccaatttgtaatcaaaatacatataaaaagactctagaattagcgaatgacggactgtcatcaa 3597583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11401596 - 11401540
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataa 57  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11401596 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataa 11401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 4511793 - 4511738
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  4511793 ttttgctgcataagattccttgtgaactccaatttgtgatcaaaatacatataaaa 4511738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 11126494 - 11126581
Alignment:
Q  15 cttctttgtattttcttcaatttt-ctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||||||||||||| |||| || || || ||||||| ||||||||| |||||| |||||  ||||||||||||||||||||||    
T  11126494 cttctttgtattttcttcagtttttctgcttttcttgctgcttaagttgccttgtgaattccaaaatgtgatcaaaatacatataaaa 11126581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 10289226 - 10289186
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  10289226 ataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 28666136 - 28666176
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  28666136 ataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 12981151 - 12981188
Alignment:
Q  98 aaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  12981151 aaaagactctaaaaatagtgaatgactgactgtcatca 12981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 26898699 - 26898740
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatca 86  Q
    ||||||||||||||| ||| |||||||||||| |||||||||    
T  26898699 ttttgctgcataagtggccttgtgaactccaaattgtgatca 26898740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 22463554 - 22463514
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||| | |||| |||||||||||||    
T  22463554 taaaaagactctaaaaatagtgtatgactgactgtcatcaa 22463514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 16953132 - 16952997
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  16953132 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaactacatataaaa 16953033  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||||  ||||||||||||    
T  16953032 agactctaaaaatagcgaatgacggactgtcatcaa 16952997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 23593427 - 23593337
Alignment:
Q  12 tctcttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  23593427 tctcttctttgtattttcttcagttttctgctctttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 23593337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 17895432 - 17895527
Alignment:
Q  42 ctcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat--aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||||||    
T  17895432 ctcttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaaaagactctagaaatagcgaatgacggactgtcatca 17895527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 8910971 - 8910886
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||| |||||| ||||||| | |||||||||| || |||||||||||| |||||||||||||||||||||||    
T  8910971 ttctttgtattttcttcatttttctgctctttttgatgcataagtttccttgtgaactccaaattgtgatcaaaatacatataaaa 8910886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 31283993 - 31283904
Alignment:
Q  14 tcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||||| |||| || ||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  31283993 tcttctttgtattttcttcagtttttctgctctttttgctgcataagttgtcttgtgaactccactttgtgatcaaaatacatataaaaa 31283904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 33418956 - 33418868
Alignment:
Q  14 tcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||| |||||||||| |||| || ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  33418956 tcttctttgcattttcttcagttttgctgctctttttgctgcataagatgccctgtgaactccaatttgtgatcaaaatacatataaaa 33418868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 21280570 - 21280654
Alignment:
Q  19 tttgtattttcttcaatttt-ctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    ||||||||||||||| |||| || || || ||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||    
T  21280570 tttgtattttcttcagtttttctgcttttcttgctgcttaagttgccttgtgaactccaaaatgtgatcaaaatacatataaaaa 21280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 13196169 - 13196082
Alignment:
Q  15 cttctttgtattttcttcaatttt-ctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||| ||||||||||| |||| || || || ||||||||||||||| | ||||||||||||  ||||||||||||||||||||||    
T  13196169 cttctttttattttcttcagtttttctgcttttcttgctgcataagttgtcttgtgaactccaaaatgtgatcaaaatacatataaaa 13196082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 31984146 - 31984107
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31984146 taaaaagactctaaaaatagcgaatgattgactgtcatca 31984107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 10499033 - 10499089
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||    
T  10499033 ttttactgcataagttgtcttgtgaactccattttgtgattaaaatacatataaaaa 10499089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 17930330 - 17930254
Alignment:
Q  25 ttttcttcaattttctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||| |||||| || || ||||||| ||||||||| ||||||||||||  |||||| |||||||||||||||    
T  17930330 ttttcttcagttttctgcttttcttgctgcttaagttgccttgtgaactccaaaatgtgatgaaaatacatataaaa 17930254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 2559910 - 2559822
Alignment:
Q  15 cttctttgtattttcttcaattttctactctttt---gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||||||||||||| |||| |   |||||   ||||||||||||||| |||||| |||||  |||||||||| |||||||||||    
T  2559910 cttctttgtattttcttcagttttttttgcttttcttgctgcataagttgccttgtgaaatccaaaatgtgatcaaattacatataaaa 2559822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12582258 - 12582217
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  12582258 ataaaaagactctaaaaatagcgaatgattgattttcatcaa 12582217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 18826794 - 18826835
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  18826794 ataaaaagactctaaaaatagcaaatgactgactgtcatcaa 18826835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 10663049 - 10663011
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  10663049 aaaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 30640548 - 30640503
Alignment:
Q  92 catataaaaagactctaaaaatagcgaatgattgactgtcatcaag 137  Q
    |||| ||||||| ||| ||||||| |||||||||||||||||||||    
T  30640548 cataaaaaaagattcttaaaatagtgaatgattgactgtcatcaag 30640503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38284281 - 38284416
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38284281 cgtgacacgattctcttctttgtattttcttcagttttctactattttgctgcataaattgccttgtgaactccaatttgtgatcaaaatacatataaaa 38284380  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||||| |||||||||||||    
T  38284381 agactctaaaaatagcgaatgactgactgtcatcaa 38284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24150030 - 24149895
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24150030 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 24149931  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||| || ||||||||||  ||||||||||||    
T  24149930 agactctagaattagcgaatgacggactgtcatcaa 24149895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34018565 - 34018699
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  34018565 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttctgaactccaatttgtgatcaaactacatataaaa 34018664  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  34018665 agactctaaaaatagcgaatgacggactgtcatca 34018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 48636843 - 48636709
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  48636843 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgtcttgtgaactccaatttgtgatcaaaatacatataaaa 48636744  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||| |||||||  |||||||||||    
T  48636743 agactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 39494693 - 39494559
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  39494693 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaattccaatttgtgatcaaaatacatataaaa 39494594  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| || ||||||||||  |||||||||||    
T  39494593 agactctagaattagcgaatgacagactgtcatca 39494559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 39501006 - 39500872
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39501006 cgtgacacgattctgttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 39500907  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| || ||||||||||  |||||||||||    
T  39500906 agactctagaattagcgaatgacggactgtcatca 39500872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 48416314 - 48416448
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||    
T  48416314 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttaacttgtgaactccaatttgtgatcaaactacatataaaa 48416413  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||  |||||||||||    
T  48416414 agactctaaaaatagcgaatgacggactgtcatca 48416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 52531707 - 52531833
Alignment:
Q  9 gattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactcta 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  52531707 gattctcttctttgtattttcttcagttttctactcttttgctgcataagttgacttgtgaactccaatttgtgatcaaactacatataaaaagactcta 52531806  T
Q  109 aaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||  | |||||||||    
T  52531807 aaaatagcgaatgacgggctgtcatca 52531833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 25961411 - 25961329
Alignment:
Q  20 ttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  25961411 ttgtattttcttcagttttctgctctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaaa 25961329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 40494148 - 40494230
Alignment:
Q  20 ttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||  |||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  40494148 ttgtattttcttcggttttctgctctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaaa 40494230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 40617754 - 40617824
Alignment:
Q  65 tgtgaactccaatttgtgatcaaaatacatataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  40617754 tgtgaactccactttgtgatcaaaatacatataaaaagactctcaaaatagcgaatgacggactgtcatca 40617824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 11194999 - 11194912
Alignment:
Q  15 cttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  11194999 cttctttgcattttcttcagtttttctgctctttttgctgcataagttgccttgtgaactccaatttatgatcaaaatacatataaaa 11194912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 30391895 - 30391809
Alignment:
Q  16 ttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||| |||||||||| |||| || ||||||| | |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  30391895 ttctttgcattttcttcagtttttctgctctttttgttgcataagtttccttgtgaactccaatttgtgatcaaaatacatataaaa 30391809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 19826741 - 19826701
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  19826741 ataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 52007391 - 52007431
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  52007391 ataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 27013267 - 27013229
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  27013267 aaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12782146 - 12782105
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  12782146 ataaaatgactctaaaaatagcgaatgactgactgtcatcaa 12782105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 44809864 - 44809905
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  44809864 ataaaaagactctaaaaatagcaaatgactgactgtcatcaa 44809905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 19819990 - 19819950
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  19819990 ataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 29324019 - 29323979
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  29324019 ataaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 15431202 - 15431163
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  15431202 aaaaagactctaaaaatagtgaatgactgactgtcatcaa 15431163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 15437816 - 15437777
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  15437816 aaaaagactctaaaaatagtgaatgactgactgtcatcaa 15437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 24045019 - 24045057
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  24045019 aaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 3718376 - 3718336
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| ||||||||||||| |||||| ||||||||||||    
T  3718376 ataaaaatactctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 40794232 - 40794200
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgac 127  Q
    |||||||||||||||||||||||||||| ||||    
T  40794232 ataaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41307311 - 41307445
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41307311 cgtgacacgattctcttctttgtattttctttagttttctactcttttgctgcataagttgccttgtgagctccaatttgtgatcaaaatacatataaaa 41307410  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||||||||||    
T  41307411 agactctaaaaatagcgaatgactgactgtcatca 41307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 26753486 - 26753620
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  26753486 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttaacttgtgaactccaatttgtgatcaaaatacatataaaa 26753585  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||| |||||||  |||||||||||    
T  26753586 agactctaaaaataacgaatgacggactgtcatca 26753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 41877549 - 41877684
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||| ||||||||    
T  41877549 cgtgacacgattctcctctttgttttttcttcagttttctactcttttgctgcataagtttccttgtgaactccactttgtgattaaaataaatataaaa 41877648  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||| |||||||||||||  ||||||||||||    
T  41877649 agactctagaaatagcgaatgacggactgtcatcaa 41877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 34831078 - 34830976
Alignment:
Q  34 attttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactctaaaaatagcgaatgattgactgtcat 133  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  34831078 attttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaagactctagaaatagcgaatgacggactgtcat 34830979  T
Q  134 caa 136  Q
    |||    
T  34830978 caa 34830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 12087296 - 12087152
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttct----------actcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaat 90  Q
    |||| |||||||||||||||||||||||||||| ||| ||          ||||||||||||| ||||||||| ||||||||||| |||||||| |||||    
T  12087296 cgtggcacgattctcttctttgtattttcttcagtttcctttagttttcaactcttttgctgcgtaagttgccttgtgaactccactttgtgattaaaat 12087197  T
Q  91 acatataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    | |||||||||||||||| |||||||||||||  |||||||||||    
T  12087196 aaatataaaaagactctagaaatagcgaatgacggactgtcatca 12087152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 12059281 - 12059377
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    ||||||| |||||||||||||||||||| |||||| ||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  12059281 cacgattttcttctttgtattttcttcatttttctgctctttttgttgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 12059377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 26908181 - 26908266
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||| | |||||||||||| || ||||||||||||||| ||||    
T  26908181 ttctttgtattttcttcaattttctgttctttttgctgcataagttgtcttgtgaactccaaattatgatcaaaatacataaaaaa 26908266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 40582572 - 40582487
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||  ||||||||    
T  40582572 ttctttgtattttcttcagttttctgctctttttgctgcataagttgccttgtgaactccaaattatgatcaaaatgaatataaaa 40582487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 23043510 - 23043423
Alignment:
Q  15 cttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  23043510 cttctttgcattttcttcagttttactgctctttttgctgcataagttgccctgtgaactccaatttgtaaacaaaatacatataaaa 23043423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 26292195 - 26292114
Alignment:
Q  16 ttctttgtattttcttcaatttt-ctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacata 95  Q
    |||||||||||||||||| |||| || || || ||||||||||||||||| ||||||||||||  |||||||||| ||||||    
T  26292195 ttctttgtattttcttcagtttttctgcttttcttgctgcataagttgccttgtgaactccaaaatgtgatcaaattacata 26292114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 21828003 - 21828041
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  21828003 aaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 25329496 - 25329455
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  25329496 ataaaaaaactctaaaaatagcgaatgactgactgtcatcaa 25329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 7270281 - 7270241
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  7270281 ataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 14016996 - 14017036
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  14016996 ataaaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 17747657 - 17747617
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17747657 ataaaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 28788361 - 28788401
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  28788361 ataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 21336704 - 21336742
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  21336704 aaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 39191371 - 39191333
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcat 133  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  39191371 ataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 40916851 - 40916889
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  40916851 aaaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 18952053 - 18952000
Alignment:
Q  47 ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||| ||||||||| |||||||| |||  |||||||||| |||||||||||    
T  18952053 ttgctgcttaagttgccttgtgaacttcaaaatgtgatcaaattacatataaaa 18952000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 25329511 - 25329548
Alignment:
Q  98 aaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  25329511 aaaaaactctaaaaatagcgaatgactgactgtcatca 25329548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 30065602 - 30065562
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||| ||| ||||||||    
T  30065602 ataaaaagactctaaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 18733 - 18599
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  18733 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 18634  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| |||||||||||||  |||||||||||    
T  18633 agactctagaaatagcgaatgacggactgtcatca 18599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 43926253 - 43926124
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagact 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  43926253 cacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgtcttgtgaactccaatttgtgatcaaactacatataaaaagact 43926154  T
Q  106 ctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||  |||||||||||    
T  43926153 ctaaaaatagcgaatgacggactgtcatca 43926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 24124921 - 24124785
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aa 99  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  24124921 cgtggcacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 24124822  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||| |||||||||||||  ||||||||||||    
T  24124821 aagactctacaaatagcgaatgacggactgtcatcaa 24124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 2778149 - 2778015
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  2778149 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccactttgtgatcaaattacatataaaa 2778050  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| |||||||||||||  |||||||||||    
T  2778049 agactctagaaatagcgaatgacggactgtcatca 2778015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 11189961 - 11189827
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11189961 cgtgacacgattctcttctttgttttttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 11189862  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| || ||||||||||  |||||||||||    
T  11189861 agactctagaattagcgaatgacggactgtcatca 11189827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25584115 - 25583982
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  25584115 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataatttgccttgtgaactccaatttgtgatcaaaatacatataaaa 25584016  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| |||||||||||||| ||| ||||||||    
T  25584015 agactct-aaaatagcgaatgactgattgtcatca 25583982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 49743691 - 49743825
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  49743691 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttaccttgtgaactccaatttatgatcaaaatacatataaaa 49743790  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||| | ||||| ||||||||||||    
T  49743791 agactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24128198 - 24128063
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aa 99  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  24128198 cgtggcacgattctcgtctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaa 24128099  T
Q  100 aagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||| |||||||||||||  |||||||||||    
T  24128098 aagactctagaaatagcgaatgacggactgtcatca 24128063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 54723164 - 54723029
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  54723164 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgacttgtgaactccaatttgtgatcaaactacatataaaa 54723065  T
Q  101 agactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||| |||   |||||||||||    
T  54723064 agactctaaaaatagcgactgacgaactgtcatcaa 54723029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 2774919 - 2774793
Alignment:
Q  9 gattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactcta 108  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  2774919 gattctctgctttgtattttcttcagttttctactcttttgctgcataagttgccttgtgaactccactttgtgatcaaattacatataaaaagactcta 2774820  T
Q  109 aaaatagcgaatgattgactgtcatca 135  Q
     |||||||||||||| |||||||||||    
T  2774819 gaaatagcgaatgatggactgtcatca 2774793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 2872987 - 2872853
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  2872987 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgcgaactccactttatgatcaaaatacatataaaa 2872888  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| ||||||||||||||  |||||||||||    
T  2872887 agactctcaaaatagcgaatgacggactgtcatca 2872853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 12535843 - 12535977
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12535843 cgtggcacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgcattgtgaactccaatttgtgatcaaaatacatataaaa 12535942  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| || |||| |||||  |||||||||||    
T  12535943 agactctagaattagcaaatgacggactgtcatca 12535977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 50462326 - 50462456
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagact 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||    
T  50462326 cacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgacttgtgaactccaatttgtgaacaaactacatataaaaagact 50462425  T
Q  106 ctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||| ||||||  ||||||||||||    
T  50462426 ctaaaaatagtgaatgacggactgtcatcaa 50462456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7485994 - 7485860
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |||||| ||||||||    
T  7485994 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagtttccttgtgaactccactttgtgattaaaataaatataaaa 7485895  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| |||||||||||||  |||||||||||    
T  7485894 agactctagaaatagcgaatgacggactgtcatca 7485860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30690158 - 30690025
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  30690158 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagtttccttgtaaactccaatttgtgatcaaaatacatataaaa 30690059  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| |||||| |||||||  |||||||||||    
T  30690058 agactct-aaaataacgaatgacggactgtcatca 30690025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 45895769 - 45895658
Alignment:
Q  25 ttttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aaaagactctaaaaatagcgaatgat 123  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  45895769 ttttcttcagttttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaaagactctagaaatagcgaatgac 45895670  T
Q  124 tgactgtcatca 135  Q
     |||||||||||    
T  45895669 ggactgtcatca 45895658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 8462458 - 8462558
Alignment:
Q  36 tttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat-aaaaagactctaaaaatagcgaatgattgactgtcatc 134  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||    
T  8462458 tttctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaaatacatataaaaaagactctagaaatagcgaatgacggactgtcatc 8462557  T
Q  135 a 135  Q
    |    
T  8462558 a 8462558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12562004 - 12562104
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  12562004 cgtgacacgatttccttctttgtattttcttcatttttctgctcttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaa 12562103  T
Q  101 a 101  Q
    |    
T  12562104 a 12562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 28265101 - 28264992
Alignment:
Q  26 tttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatata-aaaagactctaaaaatagcgaatgatt 124  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||      
T  28265101 tttcttcaatttttt-ctcttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaaagactctagaaatagcgaatgacg 28265003  T
Q  125 gactgtcatca 135  Q
    |||||||||||    
T  28265002 gactgtcatca 28264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 46985933 - 46986018
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  46985933 ttctttgtattttcttcaattttctgctctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaa 46986018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 6445576 - 6445671
Alignment:
Q  42 ctcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatat--aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||||||    
T  6445576 ctcttttgctgcataagttgccttgtgaacttcaatttgtgatcaaaatacatataaaaaaagactctagaaatagcgaatgacggactgtcatca 6445671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 17140838 - 17140753
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  17140838 ttctttgtattttctttagttttctactctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacatataaaa 17140753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 54719454 - 54719369
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  54719454 ttctttgtattttcttcagttttctgctctttttgctgcataagttgccttgtgaactctaaattgtgatcaaaatacatataaaa 54719369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 48064785 - 48064886
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataa 98  Q
    ||||||||| || |||| ||||||||||||||| |||| || ||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  48064785 cgtgtcacgttt-tcttttttgtattttcttcagtttttctgctctttttgctacataagttgccttgtgaactccactttgtgatcaaaatacatataa 48064883  T
Q  99 aaa 101  Q
    |||    
T  48064884 aaa 48064886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 52987816 - 52987727
Alignment:
Q  14 tcttctttgtattttcttcaatttt-ctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||||| |||| || ||||||| |||||||| |||| | | ||||||||| |||||||||||||||||||||||||    
T  52987816 tcttctttgtattttcttcagtttttctgctctttttgctgcatatgttgtcttttgaactccactttgtgatcaaaatacatataaaaa 52987727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 9380051 - 9380012
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatc 134  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9380051 ataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 28008866 - 28008920
Alignment:
Q  47 ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    ||||||||||||||||| ||||||||||||  |||||||||| |||||| |||||    
T  28008866 ttgctgcataagttgccttgtgaactccaaaatgtgatcaaattacataaaaaaa 28008920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 32288111 - 32288189
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaataca 93  Q
    ||||||||| |||||||| |||| | ||||||| | ||||||||||||| |||||||||||| || |||| ||||||||    
T  32288111 ttctttgtactttcttcagttttttgctctttttggtgcataagttgccttgtgaactccaaattatgatgaaaataca 32288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 41976362 - 41976321
Alignment:
Q  94 tataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  41976362 tataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 53815011 - 53814970
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  53815011 ataaaaagactctaaaaatagtgaatgactgactgtcatcaa 53814970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 16243206 - 16243166
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  16243206 ataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 34984718 - 34984758
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  34984718 ataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 54460407 - 54460367
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  54460407 ataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 538053 - 538014
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  538053 aaaaagactctaaaaatagtgaatgactgactgtcatcaa 538014  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 15196088 - 15196174
Alignment:
Q  16 ttctttgtattttcttcaattttctactcttt--tgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||||||||||||||| ||||    |||||  ||||||| |||||||| ||||||||||||  |||||||||| |||||| ||||    
T  15196088 ttctttgtattttcttcagtttttatgtctttcttgctgcacaagttgccttgtgaactccaaaatgtgatcaaattacatagaaaa 15196174  T

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Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 20729439 - 20729478
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  20729439 aaaaaaactctaaaaatagcgaatgactgactgtcatcaa 20729478  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 10884056 - 10884018
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  10884056 aaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

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Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 23299515 - 23299553
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  23299515 aaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

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Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 10880816 - 10880775
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    |||||||||||||||||||||| ||| | |||||||||||||    
T  10880816 ataaaaagactctaaaaatagcaaataactgactgtcatcaa 10880775  T

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Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 17040849 - 17040894
Alignment:
Q  55 taagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||||| || ||||||||||||  ||||||||||||||||||||||    
T  17040849 taagtttccttgtgaactccaaaatgtgatcaaaatacatataaaa 17040894  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 46884329 - 46884288
Alignment:
Q  45 ttttgctgcataagttgccgtgtgaactccaatttgtgatca 86  Q
    ||||||||||||||||||| ||||||||||||  ||||||||    
T  46884329 ttttgctgcataagttgccttgtgaactccaaaatgtgatca 46884288  T

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Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 27091300 - 27091212
Alignment:
Q  14 tcttctttgtattttcttcaattt-tctactctt-ttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    ||||||||||| ||| |||| ||| |||||| || ||||| | ||||||  | ||||||||||||  ||||||||||||||||||||||    
T  27091300 tcttctttgtactttattcagtttatctacttttcttgctacttaagttatcttgtgaactccaaaatgtgatcaaaatacatataaaa 27091212  T

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Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 29344737 - 29344773
Alignment:
Q  99 aaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  29344737 aaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

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Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 31857091 - 31857055
Alignment:
Q  99 aaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  31857091 aaagactctaaaaatagtgaatgactgactgtcatca 31857055  T

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Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45895803 - 45895771
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttca 33  Q
    |||| ||||||||||||||||||||||||||||    
T  45895803 cgtggcacgattctcttctttgtattttcttca 45895771  T

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Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 54736810 - 54736842
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgac 127  Q
    ||||||||||||||||||||| |||||||||||    
T  54736810 ataaaaagactctaaaaatagtgaatgattgac 54736842  T

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Target: scaffold0038 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 30432 - 30298
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaa 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  30432 cgtgacacgattctcttctttgtattttcttcagttttctactcttttgctgcataagttgccttgcgaactccactttatgatcaaaatacatataaaa 30333  T
Q  101 agactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| ||||||||||||||  |||||||||||    
T  30332 agactctcaaaatagcgaatgacggactgtcatca 30298  T

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Target: scaffold0427 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 4594 - 4712
Alignment:
Q  17 tctttgtattttcttcaattttctactcttttgctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaagactctaaaaatagc 116  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4594 tctttgtattttcttcagtttcctactcttttgctgcataagttgccttgtgaactccaatttgtgatcaaactacatataaaaagactctaaaaatagc 4693  T
Q  117 gaatgattgactgtcatca 135  Q
    ||||||  |||| ||||||    
T  4694 gaatgacggactatcatca 4712  T

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Target: scaffold0048 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24160 - 24059
Alignment:
Q  1 cgtgtcacgattctcttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaa 99  Q
    |||| |||||||  |||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  24160 cgtgacacgatttccttctttgtattttattcatttttctactctttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaa 24061  T
Q  100 aa 101  Q
    ||    
T  24060 aa 24059  T

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Target: scaffold0084 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 18722 - 18626
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||||||||||||| ||| || ||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18722 cacgattctcttctttgtattttcttcagtttcctgctctttttgctgcctaagttgccttgtgaactccattttgtgatcaaaatacatataaaaa 18626  T

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Target: scaffold0084; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 28698 - 28602
Alignment:
Q  6 cacgattctcttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||| ||||||||||| ||||||| ||| || ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  28698 cacgattcccttctttgtatattcttcagtttcctgctctttttgctgcataagttgccttgtgaactccactttgtgatcaaaatacatataaaaa 28602  T

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Target: scaffold0321 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 3737 - 3823
Alignment:
Q  16 ttctttgtattttcttcaattttctactctttt-gctgcataagttgccgtgtgaactccaatttgtgatcaaaatacatataaaaa 101  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  3737 ttctttgtattttcttcagttttctgctctttttgctgcataagttgccttgtgaactccaaattgtgatcaaaatacataaaaaaa 3823  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 226504 - 226465
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  226504 taaaaagactctaaaaatagcgaatgattgactgtcatca 226465  T

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Target: scaffold0381 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 6516 - 6554
Alignment:
Q  97 aaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  6516 aaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

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Target: scaffold0757 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 4603 - 4562
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  4603 ataaaaagactctaaaaatagtgaatgactgactgtcatcaa 4562  T

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Target: scaffold0520 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 4840 - 4880
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  4840 ataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

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Target: scaffold1026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 2562 - 2601
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  2562 taaaaagactctaaaaatagcgaatgactgattgtcatca 2601  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 7016 - 7055
Alignment:
Q  96 taaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  7016 taaaaagactctaaaaatagtgaatgactgactgtcatca 7055  T

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Target: scaffold0270 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 4380 - 4421
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||| |||||||||| |||||| ||||||    
T  4380 ataaaaagactctaaaagtagcgaatgactgactgacatcaa 4421  T

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Target: scaffold0270; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 11510 - 11551
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 136  Q
    ||||||||||||||||| |||||||||| |||||| ||||||    
T  11510 ataaaaagactctaaaagtagcgaatgactgactgacatcaa 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 1020 - 1060
Alignment:
Q  95 ataaaaagactctaaaaatagcgaatgattgactgtcatca 135  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  1020 ataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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