View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_184 (Length: 238)
Name: NF3772_high_184
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_184 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14782737 - 14782517
Alignment:
| Q |
1 |
tcaatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcatt |
100 |
Q |
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| T |
14782737 |
tcaatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcatt |
14782638 |
T |
|
| Q |
101 |
gaattctagtgctgagagaccaaaaggactaacgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttattta |
200 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14782637 |
gaattctagtagtgagagaccaaaaggactaacaaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttattta |
14782538 |
T |
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| Q |
201 |
ccagttatggagaaggtttat |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
14782537 |
ccagttatggagaaagtttat |
14782517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 14774840 - 14774640
Alignment:
| Q |
21 |
atcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagtgctgagagac |
120 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| ||||| || ||||| ||| | ||||| ||| ||||||||||| |||||||| ||| | || |
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| T |
14774840 |
atcattgtgaagcaaaaaatcaccttttcaaatctcaactgtgtgatccttcttacactaagttctatccttcttgcattggattctagtaatgaaaaac |
14774741 |
T |
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| Q |
121 |
caaaaggactaacgaaaaaagaatactttattggattcttttgcacccttggtgcagggttgttatttgcactttatttaccagttatggagaaggttta |
220 |
Q |
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|||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
14774740 |
caaatgggctaactaaaaaagagtactttattggattcttttgcacaattggtgcagggttgttatttgcattgtatttaccagtgatggagaaggttta |
14774641 |
T |
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| Q |
221 |
t |
221 |
Q |
| |
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| |
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| T |
14774640 |
t |
14774640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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