View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_194 (Length: 235)
Name: NF3772_high_194
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_194 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2306023 - 2306189
Alignment:
| Q |
1 |
ccccaagagttgatcaagcttccatcattagaacaactcgaccttggtagaaactgcttcagtggcagaatccccccaagtaatggaaatttcaaaagtc |
100 |
Q |
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| T |
2306023 |
ccccaagagttgatcaagcttccatcattagaacaactcgaccttggtagaaactgcttcagtggcagaatccccccaagtaatggaaatttcaaaagac |
2306122 |
T |
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| Q |
101 |
tcaagttcctaattttagctgggtgaaaaaagttggaaaatctgaaatcggaaacaaagcattttcc |
167 |
Q |
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| T |
2306123 |
tcaagttcctaattttagctgggtgaaaaaagttggaaaatctgaaatcgcaaacaaagcattttcc |
2306189 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 13149077 - 13148997
Alignment:
| Q |
42 |
ccttggtagaaactgcttcagtggcagaatccccccaagtaatggaaatttcaaaagtctcaagttcctaattttagctgg |
122 |
Q |
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| T |
13149077 |
ccttggtggaagctacttcaatggaagaatcccaccaagctatggaaatttcaaaagactcaagttcctagatttagctgg |
13148997 |
T |
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