View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_196 (Length: 235)
Name: NF3772_high_196
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_196 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24909319 - 24909539
Alignment:
| Q |
1 |
gtgaaaattgttgatctgcctgaagtcatcattgatctacttgaagacttcaagagaaagaaagacaagtgttggtgttcaaaacaccacaattaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24909319 |
gtgaaaattgttgatctgcctgaagtcatcattgatctacttgaagacttcaagagaaagaaagacaagtgttggtgttcaaaacaccacaattaaaatg |
24909418 |
T |
|
| Q |
101 |
taaaaggcagtgttctagaaagagaaaaacttaagaaataccaagaacatgatgtataaattcattgtaatatcctttcaaaagagagtcattagatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
24909419 |
taaaaggcagtgttctagaaagagaaaaacttaagaaaaaccaagaacatgatgtataaattcattgtaatatcctctcaaaagagagtgattagatcat |
24909518 |
T |
|
| Q |
201 |
gttgtaaatcaatagtgtagt |
221 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
24909519 |
gttgcaaatcaatagtgtagt |
24909539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University