View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_204 (Length: 227)
Name: NF3772_high_204
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_204 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 40409329 - 40409433
Alignment:
| Q |
119 |
cagtcacgaacgtgtggtaaattaaggacattggacatgggagaaagattgccacacttacattcccacaagaccgtttcaactggttcaggactccaat |
218 |
Q |
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| T |
40409329 |
cagtcacgagcgtgtggtaaattaaggacattggacatgggagaaagattgccacacttacattcccaccagaccgtttcgactggttcaggactccaat |
40409428 |
T |
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| Q |
219 |
ttatg |
223 |
Q |
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||||| |
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| T |
40409429 |
ttatg |
40409433 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40409212 - 40409256
Alignment:
| Q |
1 |
tctgcaagatttggaatgacgttgatgtaggtataattatattac |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40409212 |
tctgcaagatttggaatgacgttgatgtaggtataattatattac |
40409256 |
T |
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