View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_209 (Length: 225)
Name: NF3772_high_209
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_209 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 31215019 - 31215214
Alignment:
| Q |
14 |
acagacacagacatataaacaccgataataagttaacaaaatagaagtcattgaatgtaaacacaagtatcagtcacatataggacaccagacacacttg |
113 |
Q |
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| T |
31215019 |
acagacacagacacataaacaccggtaataagttaacaaaatagaagttattgaatgtaaccacatgtatcagtcacatatagaacaccagacacactta |
31215118 |
T |
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| Q |
114 |
taatttaaagtgtcagtgctacataactaaacacataagaaaactttaaatttaaccttactttggtatcctgtgatgttctgtaggagttcttct |
209 |
Q |
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| T |
31215119 |
taatttaaagtgtcagtgctacataactaaacacataagaaaactttaaatttaaccttactatggtatcctgtgatgttctgtaggagttcttct |
31215214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 31201889 - 31201988
Alignment:
| Q |
110 |
cttgtaatttaaagtgtcagtgctacataactaaacacataagaaaactttaaatttaaccttactttggtatcctgtgatgttctgtaggagttcttct |
209 |
Q |
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| T |
31201889 |
cttgtaatttaaagtgttggtgctacatagctacacacataagcaaacttgaaatttggccttactatggtatcctgtgatgttctgcaggagttcttct |
31201988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 31201819 - 31201879
Alignment:
| Q |
18 |
acacagacatataaacaccgataataagttaacaaaatagaagtcattgaatgtaaacaca |
78 |
Q |
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| T |
31201819 |
acacagacacataaacaccggtaataagtcaacaaaatagaagttgttgaatgtaaccaca |
31201879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 31652450 - 31652490
Alignment:
| Q |
33 |
caccgataataagttaacaaaatagaagtcattgaatgtaa |
73 |
Q |
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| T |
31652450 |
caccgataataatttaagaaaatagaagtgattgaatgtaa |
31652490 |
T |
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