View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_210 (Length: 224)
Name: NF3772_high_210
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_210 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 5935158 - 5935347
Alignment:
| Q |
16 |
tcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttc |
115 |
Q |
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| T |
5935158 |
tcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttcagtttacttactgacaagcttc |
5935257 |
T |
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| Q |
116 |
tttgggttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttctgcgctc |
205 |
Q |
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| T |
5935258 |
tttgggttccttctatttggtgacgatactcttcctgacgttcttgccaattttgatactaatctcggaattccttttggttctgcgctc |
5935347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 5963559 - 5963740
Alignment:
| Q |
20 |
aacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttctttg |
119 |
Q |
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||||| ||||||||||||||||| |||||| |||||| ||| ||||||||| |||| |||||||||||||||||||| || |||||||||||||||||| |
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| T |
5963559 |
aacattgataatgaactggaggattcctcacggatgcgtggggttgtgcgtacttcccttactctatgctcttcagtatatgtactgacaagcttctttg |
5963658 |
T |
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| Q |
120 |
ggttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttctgc |
201 |
Q |
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| T |
5963659 |
ggttccttctatttggtgaaggaactcttgatgatgtgcttgccaattttgatactgattttggaattccttttggttctgc |
5963740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 5968694 - 5968877
Alignment:
| Q |
22 |
catagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttctttggg |
121 |
Q |
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|||||| |||||||||||||| |||||| |||| | ||| ||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
5968694 |
catagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacttcccttactctatgctcttcggtgtacttactgacaagcttctttggg |
5968793 |
T |
|
| Q |
122 |
ttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttctgcgctc |
205 |
Q |
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||||| ||||||||||| | |||| ||| |||||||||||||| |||||| ||||||||||||| ||||||| ||||||| |
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| T |
5968794 |
ttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttttgcgctc |
5968877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 5984703 - 5984886
Alignment:
| Q |
22 |
catagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttctttggg |
121 |
Q |
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||||||||||||||||||||| |||||| ||||| || |||||| || |||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
5984703 |
catagataatgaactggaggattcctcacggatgagcggggttgtgtgtacttcccttactctatgctcttcggtgtacttactgacaagcttctttggg |
5984802 |
T |
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| Q |
122 |
ttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttctgcgctc |
205 |
Q |
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||||| ||||||||||| | |||| ||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||| |
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| T |
5984803 |
ttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttctgcgctc |
5984886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 8715453 - 8715270
Alignment:
| Q |
22 |
catagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttctttggg |
121 |
Q |
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|||||| |||||||||||||| |||||| |||| | ||| ||||||||| | || ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8715453 |
catagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacatcccttactctatgctcttcggtgtacttactgacaagcttctttggg |
8715354 |
T |
|
| Q |
122 |
ttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttctgcgctc |
205 |
Q |
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||||| ||||||||||| | |||| ||| |||||||||||||| |||||| ||||||||||||| ||||||| ||||||| |
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| T |
8715353 |
ttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttgtgcgctc |
8715270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 5628325 - 5628142
Alignment:
| Q |
16 |
tcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttc |
115 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||| |||||| |||||||| ||| | | || ||||||||| || || || ||| ||| ||||||| |
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| T |
5628325 |
tcacagcatagataatgaactcgaggacaactcacagatgcaaggcgttgtacgtacagccctcggtctatgctcatccgtgtatttaatgataagcttc |
5628226 |
T |
|
| Q |
116 |
tttgggttcctcctatttggtgacgatactcttcctgacgttcttgccaatttcgatactaatcttggaattcctttcggttct |
199 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||| ||||||||||||||| || |||||||||||||||| |||||| |
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| T |
5628225 |
tttgggttcctcctatttggtgaaggaactcttgatgacgtacttgccaatttcgatgctgatcttggaattccttttggttct |
5628142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 50616203 - 50616094
Alignment:
| Q |
20 |
aacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttctcttactctatgctcttcagtttacttactgacaagcttctttg |
119 |
Q |
| |
|
||||||||||||||||| | | |||| || |||||||||||||||| ||||||| |||||||||| | || |||||||||| ||||| ||||||||| |
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| T |
50616203 |
aacatagataatgaactatataattcctaatagatgcatggcgttgtgagtgcttcccttactctataatatttagtttacttaatgacatgcttctttg |
50616104 |
T |
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| Q |
120 |
ggttcctcct |
129 |
Q |
| |
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|| ||||||| |
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| T |
50616103 |
ggctcctcct |
50616094 |
T |
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