View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_215 (Length: 221)
Name: NF3772_high_215
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_215 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41243469 - 41243689
Alignment:
| Q |
1 |
cctccaaacatatagtcctatgttgctcaatttgcattaaaacctttgactttccctgatttctttgacttcaaattaaatgacaaataaaacctttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41243469 |
cctccaaacatatagtcctatgttgctcaatttgcattaaaacctttgactttccctgatttctttgacttcaaattaaatgacaaataaaacctttttc |
41243568 |
T |
|
| Q |
101 |
acacacattgcttcaaaatctcattttcgtaattgagggtgacaatggcagaaataaatcatataacaaatactctttggatttccaaatacattccttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41243569 |
acacacattgcttcaaaatctcattttcgtaattgagggtgacaatgacagaaataaatcatataacaaatactctttggatttccaaatacattccttg |
41243668 |
T |
|
| Q |
201 |
tgattttatttttcaggacaa |
221 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
41243669 |
tgattttatctttcaggacaa |
41243689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University