View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_27 (Length: 457)
Name: NF3772_high_27
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 12382680 - 12382282
Alignment:
| Q |
14 |
aggagacaaaaacttctgccttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtc |
113 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12382680 |
aggagacaaaaacttatgtcttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtc |
12382581 |
T |
|
| Q |
114 |
actctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttcta |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
12382580 |
actctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctattttctttagagtcggatttgttgttcta |
12382481 |
T |
|
| Q |
214 |
acactagtcatatttctctatcgtaacacatcataatcaaaatcggcttgttagatgaacattaccttgtaagttctaatagatcttatcaccagctaac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12382480 |
-cactagtcatatttctctatcgtaacacatcataatcaaaatcggctcgttagatgaacattaccttgtaagttctaatagatcttatcaccagctaac |
12382382 |
T |
|
| Q |
314 |
gtgacgtttgagtatttttatgatactccacccaacaatatttgatttgagcgcgtgaataatataataattcatttccatatctaaaatatactctaat |
413 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12382381 |
gtgacgtttgagtatttttatgatactctacccaacaatatttgatttgagtgcgtgaacaatataataattcatttccatatctaaaatatactctaat |
12382282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 12386747 - 12386349
Alignment:
| Q |
14 |
aggagacaaaaacttctgccttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtc |
113 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12386747 |
aggagacaaaaacttatgtcttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtc |
12386648 |
T |
|
| Q |
114 |
actctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttcta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
12386647 |
actctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctattttctttagagtcggatttgttgttcta |
12386548 |
T |
|
| Q |
214 |
acactagtcatatttctctatcgtaacacatcataatcaaaatcggcttgttagatgaacattaccttgtaagttctaatagatcttatcaccagctaac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12386547 |
-cactagtcatatttctctatcgtaacacatcataatcaaaatcggctcgttagatgaacattaccttgtaagttctaatagatcttatcaccagctaac |
12386449 |
T |
|
| Q |
314 |
gtgacgtttgagtatttttatgatactccacccaacaatatttgatttgagcgcgtgaataatataataattcatttccatatctaaaatatactctaat |
413 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12386448 |
gtgacgtttgagtatttttatgatactctacccaacaatatttgatttgagtgcgtgaacaatataataattcatttccatatctaaaatatactctaat |
12386349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 33 - 413
Target Start/End: Complemental strand, 12369424 - 12369044
Alignment:
| Q |
33 |
cttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtcactctgctgtcggagatgt |
132 |
Q |
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|
|||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
12369424 |
cttcttgcaattttgtagtttttaaacacaccttgtactatgtaaccttaaacattgcattacagaaaaaccacaacagtcacacagctgtcggagatgt |
12369325 |
T |
|
| Q |
133 |
tggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttctaacactagtcatatttctct |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
12369324 |
tggcatattgactgaacttgatgatcaatcattgtgtttcgtgattcatctgttttctttagagtcgaatttgttgttctaacactagtcatatttctct |
12369225 |
T |
|
| Q |
233 |
atcgtaacacatcataatcaaaatcggcttgttagatgaacattaccttgtaagttctaatagatcttatcaccagctaacgtgacgtttgagtattttt |
332 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||| |||||||||| |
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| T |
12369224 |
atcataacacatcataatcaaaatcggctcgttagatgaacattaccttataagttctaatagatcttatcaccatctaatgcgacgttcgagtattttt |
12369125 |
T |
|
| Q |
333 |
atgatactccacccaacaatatttgatttgagcgcgtgaataatataataattcatttccatatctaaaatatactctaat |
413 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12369124 |
atgatactccacccaacaatatttgatttgagtgcgtgaataatataataattcatttccatatctaaaatatactctaat |
12369044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 15846753 - 15846717
Alignment:
| Q |
65 |
ttgtactatgtaaccttaagcattgcataacagaaaa |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
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| T |
15846753 |
ttgtactatgtaatcttaagcattgcataatagaaaa |
15846717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 15860813 - 15860777
Alignment:
| Q |
180 |
atctgttttctttagagttggatttgttgttctaaca |
216 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||| |
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|
| T |
15860813 |
atctgtttgctttagagttgggtttgttgttctaaca |
15860777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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