View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_28 (Length: 456)
Name: NF3772_high_28
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 198 - 437
Target Start/End: Original strand, 14720112 - 14720351
Alignment:
| Q |
198 |
tcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttcgaataccaatatcgttgcatgtcatatgttcattcttag |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14720112 |
tcaaattcatgcatatgtgcacacatcatgaggattgtcataggatgatacaagaagattggaataccaatatcgttggatgtcatatgttcattcttag |
14720211 |
T |
|
| Q |
298 |
ccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaatgtgcataacatggttagagttgctgaacaaaatgttgct |
397 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14720212 |
tcagaagctcaaaattttgaaacaaaagttgaaagtctggaataaaactgtctttggcaatgtgcataacatggttagagttgctgaacaaaatcttgct |
14720311 |
T |
|
| Q |
398 |
caactgcaatctgatatggatatcaacggtatcactaact |
437 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14720312 |
caactgcaatctgatatggataccaatggtatcactaact |
14720351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 59 - 390
Target Start/End: Complemental strand, 28187931 - 28187600
Alignment:
| Q |
59 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
158 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||| |||||||||||| |||||||| ||| |||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
28187931 |
ttggatagagtgatttgtaatcaaaactggctggatgtttgcaactctctgaatgtgtcaacactggtaaagcacaagtcggatcactttccactattac |
28187832 |
T |
|
| Q |
159 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttc |
258 |
Q |
| |
|
|||| ||||| ||||| || ||||||||| | || ||||| ||||||||||| ||||||| |||||| | |||||||| ||| ||||||||||||| | |
|
|
| T |
28187831 |
ttgaatttgataattctactcatagttttacttcccaatttaaattcatgcaattgtggacccatcataaagattgtcacagggtgatacaagaagtctg |
28187732 |
T |
|
| Q |
259 |
gaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaat |
358 |
Q |
| |
|
||| || ||||| |||| |||||||| ||||||||||||||||| |||||||| || || |||||||| |||||| |||||||||| | ||||| ||| |
|
|
| T |
28187731 |
gaacacaaatattgttggctgtcatatattcattcttagccagaaactcaaaatcctaaagcaaaagttaaaagtctggaataaaactgtttttggtaat |
28187632 |
T |
|
| Q |
359 |
gtgcataacatggttagagttgctgaacaaaa |
390 |
Q |
| |
|
||||| |||||||||| ||| || |||||||| |
|
|
| T |
28187631 |
gtgcacaacatggttaaagtggcagaacaaaa |
28187600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 59 - 374
Target Start/End: Original strand, 7572295 - 7572610
Alignment:
| Q |
59 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
158 |
Q |
| |
|
||||||||||| |||| ||||||| | |||| |||| ||||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||| | |||| |
|
|
| T |
7572295 |
ttggatagagttatttttaatcaacaccggctggatgtctgcaattctctgaatgtgtcaacactggtaaagcataagtctgatcactttccactgttac |
7572394 |
T |
|
| Q |
159 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttc |
258 |
Q |
| |
|
|||| ||||| ||||| | ||||||||| | || ||||| ||||| ||||| |||||||| || ||| | ||||||| ||| ||||||||||||| | |
|
|
| T |
7572395 |
ttgaatttgataattcttctcatagttttgcttcccaatttaaatttatgcaaatgtggacccaccataaagattgtcgcagggtgatacaagaagtctg |
7572494 |
T |
|
| Q |
259 |
gaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaat |
358 |
Q |
| |
|
||| || || || |||| |||||||||||||||||| ||||||| || |||||| | || ||||| |||||||| |||||||||| | ||||| ||| |
|
|
| T |
7572495 |
gaacacaaacattgttggttgtcatatgttcattctttgccagaaactaaaaattttaaagcaaaaattgaaagtttggaataaaactgtttttggtaat |
7572594 |
T |
|
| Q |
359 |
gtgcataacatggtta |
374 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
7572595 |
gtgcacaacatggtta |
7572610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 10009597 - 10009703
Alignment:
| Q |
128 |
aagcacaagtctgatcattttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatg |
227 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||||||||| ||| |||||||||| || ||||| || || ||||| ||||||| ||||||| |
|
|
| T |
10009597 |
aagcacaagtcagatcattttcctcttttagttgagtttgaaacttctcatcatagttttttgtcgcaatttaagtttatgcaaatgtggattcatcatg |
10009696 |
T |
|
| Q |
228 |
aggattg |
234 |
Q |
| |
|
| ||||| |
|
|
| T |
10009697 |
aagattg |
10009703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University