View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_29 (Length: 449)
Name: NF3772_high_29
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Complemental strand, 51294701 - 51294291
Alignment:
| Q |
14 |
caaagggaaaagaaagaactagaccaccatcatatatatataatcaaacgctgatcaagaacaactgcagtaaattattataaaactgactacaaccaaa |
113 |
Q |
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| T |
51294701 |
caaagggaaaagaaagaactagaccaccatcatatata----atcaaacgatgatcaagaacaactgcagtaaattattataaaactgactacaaccaaa |
51294606 |
T |
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| Q |
114 |
taaagaaaacattatattttacatttggggagggggattattggtaggaaaaacaagaatgaacgaagaagttaaaatgaaatttcaagaagcaatttgt |
213 |
Q |
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| T |
51294605 |
taaagaaaacattatattttacatttggggagggggattattggtaggaaaaacaagaatgaa----gaagttaaaatgaaatttcaagaagcaatttgt |
51294510 |
T |
|
| Q |
214 |
tgctcagaatcagtggctcggttggcatagaatctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51294509 |
tgctcagaatcagtggctcggttggcatagaatctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcat |
51294410 |
T |
|
| Q |
314 |
cacttgcaaatatccttctgctactgccatcatcatcataatagtaataatcatccctactgcttcctccacttgagaaacaagacttcaacataccaca |
413 |
Q |
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| T |
51294409 |
cacttgcaaatatccttctgctactgccatcatcatcataatagtaataatcatccctactgcttcctccacttgagaaacaagacttcaacataccaca |
51294310 |
T |
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| Q |
414 |
aaaggaagaggacttcttg |
432 |
Q |
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| T |
51294309 |
aaaggaagaggacttcttg |
51294291 |
T |
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Back To:
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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 19574945 - 19575032
Alignment:
| Q |
245 |
atctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcatcacttgcaaatatccttct |
332 |
Q |
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|||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||| |
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| T |
19574945 |
atctagcaatgaaatcagaagctttcctatcaataccaggctcagcaacccaacaacctctatcttcatcacttgcaaacattcttct |
19575032 |
T |
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