View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_3 (Length: 758)
Name: NF3772_high_3
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 11 - 636
Target Start/End: Original strand, 13189218 - 13189853
Alignment:
| Q |
11 |
cagagatttaaaaatatatcaacttactcattcataaacaacataa----------tataaaaattaacatatagtaatgatgtcaaatgaatctataga |
100 |
Q |
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| T |
13189218 |
cagagatttaaaaatatatcaacttactcattcataaacaacatatcatatgaatctataaaaattaacatatagtaatgatgtcaaatgaatctataga |
13189317 |
T |
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| Q |
101 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
200 |
Q |
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| T |
13189318 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
13189417 |
T |
|
| Q |
201 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaagtttggatcaatagctaca |
300 |
Q |
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| T |
13189418 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaagtttggatcaatagctaca |
13189517 |
T |
|
| Q |
301 |
actacaagatttggtatctttctgattccgttagcaccaataacatgtcttagacttcttgaagggactctcaatttatcaaaatattcatttttctaat |
400 |
Q |
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| T |
13189518 |
actacaagatttggtatctttctgattccgttagcaccaataacatgtcttagacttcttgaagggactctcaatttatcaaaatattcatttttctaat |
13189617 |
T |
|
| Q |
401 |
cttaataaacctatttatgatccattattttcacaaatcatatggctagaatgtaaacaatgtcattacttagtatttagttggggaaatggaaggtcag |
500 |
Q |
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| T |
13189618 |
cttaataaacctatttatgatccattattttcacaaatcatatggctagaatgtaaacaatgtcattacttagtatttagttggggaaatggaaggtcag |
13189717 |
T |
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| Q |
501 |
aggagagtaaaatcacaaatcaactgcatttacgtggtcatcacatcgatggtcgttggatcaagatcagacgatctaagtttcaagcttgatattctag |
600 |
Q |
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| T |
13189718 |
aggagagtaaaatcacaaattaaccgcatttacgcggtcatcacatcgatggttgttggatcaagatcaaacgatctaaatttcgagcttgatattctag |
13189817 |
T |
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| Q |
601 |
agtcttaaataaatcaaaatctacttgctttcttca |
636 |
Q |
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| T |
13189818 |
actcttaaataaatcaaaatctacttgcttttttca |
13189853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 85 - 359
Target Start/End: Original strand, 13180980 - 13181255
Alignment:
| Q |
85 |
caaatgaatctatagaatttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatca--cctatgttttaccgcaactgagct |
182 |
Q |
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| T |
13180980 |
caaatggatctatcaaatttaataggagaaagaattcat-tcaaattgagtaaaacatatatcgtt-caaatcaaaccaatcttttaccgccgttgagct |
13181077 |
T |
|
| Q |
183 |
gttcgactggaggcgaacatcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaag |
282 |
Q |
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| T |
13181078 |
gctcaactggacgcgaacatcaagtctcgcagctgtttgttgaaccttacaatatgtgttccaggataaagaaatatcgacatcattaaactaagcaaaa |
13181177 |
T |
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| Q |
283 |
tttggatcaatagctacaactacaagatttggtatctttctgattccgttagcaccaa-taacatgtcttagacttct |
359 |
Q |
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||| ||| |||||||| |||||||||||||||||||||||| |||| ||||||||||| | || |||||||||||||| |
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| T |
13181178 |
ttttgattaatagctaaaactacaagatttggtatctttcttattcagttagcaccaatttacttgtcttagacttct |
13181255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 707
Target Start/End: Original strand, 13181400 - 13181554
Alignment:
| Q |
552 |
gtcgttggatcaagatcagacgatctaagtttcaagcttgatattctagagtcttaaataaatcaaaatctacttgctttcttcattgttttgatctcca |
651 |
Q |
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| T |
13181400 |
gtcgttggattaagatcagatggtttagatttcaagctctataatttagagtaataaa-aaacctaaatctacttgttttctgtattgttttgatctcga |
13181498 |
T |
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| Q |
652 |
tctaacaaccattgatatgttgtctgcatgaatatgtgactgcaacaaactcaaat |
707 |
Q |
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| T |
13181499 |
tcgatcaaccattgacgagttgtctgcataaatatgtgactgcagcaaattcaaat |
13181554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 13181274 - 13181339
Alignment:
| Q |
394 |
ttctaatcttaataaacctatttatgatccattattttcacaaatcatatggctagaatgtaaaca |
459 |
Q |
| |
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| T |
13181274 |
ttctaaacttaacaaacctatttatgatccttgagttttacacaacatacggctagaatgtaaaca |
13181339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 3706442 - 3706389
Alignment:
| Q |
542 |
cacatcgatggtcgttggatcaagatcagacgatctaagtttcaagcttgatat |
595 |
Q |
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| T |
3706442 |
cacatcgatggtcgttggatcaagatcagatgatccatgtttcaagctcgatat |
3706389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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