View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_34 (Length: 440)
Name: NF3772_high_34
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 15970560 - 15970148
Alignment:
| Q |
18 |
cttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgagcaccaaaaggattagcttct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15970560 |
cttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgggcaccaaaaggattagcttct |
15970461 |
T |
|
| Q |
118 |
ggcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15970460 |
ggcttcccaccattctcttcaaaagcagctctaagtctcccaataagtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtg |
15970361 |
T |
|
| Q |
218 |
gatttggatgtccataaaagggacaaatctgagtatgaaccttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactaca |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15970360 |
gatttggatgtccataaaagggacaaatcagagtatgaaccttagtttttccaaattggtcgaggtatcgcaagaattcaaggacatgagctccactaca |
15970261 |
T |
|
| Q |
318 |
acgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttgattctcgtatctacttggtgtcgttgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15970260 |
acgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttgattctcgtatctacttggtgtcgttgtt |
15970161 |
T |
|
| Q |
418 |
gatgttgttgatg |
430 |
Q |
| |
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||||||||||||| |
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| T |
15970160 |
gatgttgttgatg |
15970148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 33671941 - 33672318
Alignment:
| Q |
18 |
cttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgagcaccaaaaggattagcttct |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||| | |||||||||||||||||| ||||| | |||| ||||||||||||||||||||| ||| |||| |
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|
| T |
33671941 |
cttctttttctcatagctgatacctctagctttcgattgagaatccctaacttcacgaagaaagagtctaacagcacgagcaccaaaagggttatcttca |
33672040 |
T |
|
| Q |
118 |
ggcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtg |
217 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| || || ||||| | |||||||||||| ||||| ||||| || |||||||| ||||| |||||||||| |
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| T |
33672041 |
ggtttcccaccattttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtg |
33672140 |
T |
|
| Q |
218 |
gatttggatgtccataaaagggacaaatctgagtatgaaccttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactaca |
317 |
Q |
| |
|
| |||||||| ||| |||| ||||||||||| | ||||||||||||||| ||||| || || || || | || |||||||| ||||| ||||||||||| |
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| T |
33672141 |
ggtttggatgaccaaaaaatggacaaatctgtgaatgaaccttagttttcccaaactgatcaagataccttaaaaattcaagaacatgtgctccactaca |
33672240 |
T |
|
| Q |
318 |
acgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttgattctc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |
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|
| T |
33672241 |
acgtgagagtgaaagtggtggtctatggtttcttaggtattgaccaaaagtgttccagtctcttcttttttgattctc |
33672318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 30503838 - 30504064
Alignment:
| Q |
19 |
ttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgagcaccaaaaggattagcttctg |
118 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | |||| ||| | ||| || ||||||||||||| |||||| | ||||||||| ||||| | ||||| |
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|
| T |
30503838 |
ttcttcttctcataactaatacctcttgctttggattgaagatcacgaacctcacgaaggtaaagtctaacagctctagcaccaaatggatttgtttctg |
30503937 |
T |
|
| Q |
119 |
gcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtgg |
218 |
Q |
| |
|
||||||| ||||| || |||||||| || || | | || || |||||||||||||||||||| ||||| | | ||||||||||||||||| || || |
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|
| T |
30503938 |
gcttccctccattttcctcaaaagctgcccttaaacgacctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagg |
30504037 |
T |
|
| Q |
219 |
atttggatgtccataaaagggacaaat |
245 |
Q |
| |
|
|||||||||||||| || |||||||| |
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|
| T |
30504038 |
gtttggatgtccatagaatggacaaat |
30504064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 35608830 - 35608696
Alignment:
| Q |
87 |
aacagcacgagcaccaaaaggattagcttctggcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgct |
186 |
Q |
| |
|
||||| ||||| ||||||||| |||| || ||| ||||| |||||||| ||||||| | ||| | || ||||| || || ||||||||||| ||| |
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|
| T |
35608830 |
aacagaacgagaaccaaaagggttagtctcaggccgaccaccgttctcttcgtaagcagcacgaaggcgaccgatgagagcgtcgagactaccccacgct |
35608731 |
T |
|
| Q |
187 |
tggcgaagaggacatggacatggtgcaggtggatt |
221 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| |
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|
| T |
35608730 |
tgacgaagaggacatggacaaggagctggtggatt |
35608696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 38980826 - 38980600
Alignment:
| Q |
19 |
ttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgagcaccaaaaggattagcttctg |
118 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| | |||| ||| | ||||||||||||||| || | ||||| | ||||||||| ||||| | ||||| |
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|
| T |
38980826 |
ttcttcttctcgtaactaatacctcttgctttcgattgaagatcgcgaacttcgcgaaggtagagcctcacagctctagcaccaaatggatttgtttctg |
38980727 |
T |
|
| Q |
119 |
gcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtgg |
218 |
Q |
| |
|
| || || ||||| |||||||| || || | ||| | || |||||||||||||| || ||||||||||| | |||||||||||||||||||| ||||| |
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|
| T |
38980726 |
gttttcctccattttcttcaaaggcggcacgaagacgacctatgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtgg |
38980627 |
T |
|
| Q |
219 |
atttggatgtccataaaagggacaaat |
245 |
Q |
| |
|
||||||||| |||||||| |||||||| |
|
|
| T |
38980626 |
atttggatgcccataaaatggacaaat |
38980600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 37975316 - 37974946
Alignment:
| Q |
19 |
ttctttttctcataactaatacctctagctttagcttgagaatccctaacttcgcgaaggtaaagtcgaacagcacgagcaccaaaaggattagcttctg |
118 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||||| ||| |||||||| | ||| || | | ||||||||| || |||||||| || ||| |
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|
| T |
37975316 |
ttcttcttctcataaccaatccctctagctttagcttgagcatctctaacttccctaagatacaacctaacagcacgtgctccaaaagggttcatctctt |
37975217 |
T |
|
| Q |
119 |
gcttcccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtgg |
218 |
Q |
| |
|
| ||||| ||||||||||||||||| | | ||| ||||| || ||||||||||| ||||| ||||| | |||||| |||||||| | ||||| |
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|
| T |
37975216 |
gtgaaccaccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaagcttgtttcaaaggacaaggacatggacctggtgg |
37975117 |
T |
|
| Q |
219 |
atttggatgtccataaaagggacaaatctgagtatgaaccttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactacaa |
318 |
Q |
| |
|
| || | |||| || | | ||| | | || ||||||||| ||||||||||| || || | |||||| | || ||||| ||||| || ||||||||| |
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|
| T |
37975116 |
gtgtgagtttccaaaataagcacagttttcagaatgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatgtgcaccactacaa |
37975017 |
T |
|
| Q |
319 |
cgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttg |
389 |
Q |
| |
|
|||||||||| | |||||| | ||||||| |||||||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
37975016 |
cgtgagagtgttaatggtggacgatggttttttaggtattgaccaaaagtgttccaatcacgtctcttttg |
37974946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 32002323 - 32002379
Alignment:
| Q |
333 |
tggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttg |
389 |
Q |
| |
|
||||||||| || || |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32002323 |
tggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttg |
32002379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 39556627 - 39556531
Alignment:
| Q |
140 |
aagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaa |
236 |
Q |
| |
|
||||||| || | ||||||||| || ||||||||||| ||||| ||||| | ||| ||||||| ||| ||||| ||||| | ||| ||||||||||| |
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|
| T |
39556627 |
aagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgctggtggctctggctgtccataaaa |
39556531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 32002114 - 32002208
Alignment:
| Q |
124 |
ccaccattctcttcaaaagcagctctaagcctcccaatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtgg |
218 |
Q |
| |
|
|||||||| |||||| |||||||||| | || ||||| |||||||||||||| ||||| ||||| |||||||| | ||||||| ||||||| |
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|
| T |
32002114 |
ccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
32002208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 39556413 - 39556377
Alignment:
| Q |
354 |
gtattgtccaaatgtgttccaatctcttctcttttga |
390 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39556413 |
gtattgaccaaaagtgttccaatctcttctcttttga |
39556377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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