View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_35 (Length: 439)
Name: NF3772_high_35
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 50 - 424
Target Start/End: Complemental strand, 49718060 - 49717710
Alignment:
| Q |
50 |
gacgaaatccatgtaaattttatgtcacaaaaatactagagtgctttggaaaagacaacagagattgtaaattttatccaacactcttcaattcttgttt |
149 |
Q |
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| T |
49718060 |
gacgaaatccatgtaaattttatgtcacaaaaatactagagtgctttggaaaagacagcagagattgtaagtgggacccat-----ttaaattcttgttt |
49717966 |
T |
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| Q |
150 |
tcccttacttttgaaccaaacacagttttaacgaaagcttcagcaagagcgagtgatcaacacagattatggccaaattgcagtctcatacggtctattg |
249 |
Q |
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| T |
49717965 |
tcccttacttttgaaccaaacacagttttaacgaaagcttcagcaagagcgag-------------------ccaaattgtagtctcatacggtcaattg |
49717885 |
T |
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| Q |
250 |
attcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatgggtactgtttgtgctagatacccatttgt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49717884 |
attcatttgaaacaaaataatactaggatattttttgtgaattgtgaagtttgaagatttgagtaatgatgggtactgtttgtgctagatacccatttgt |
49717785 |
T |
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| Q |
350 |
aatccctttccattcccaaaccctaactcgcagattggattgctcaatatcccaattccccctttccagaatcac |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49717784 |
aatccctttccattcccaaaccctaactcgcagattggattgctcaatctcccaattccccctttccagaatcac |
49717710 |
T |
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