View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_37 (Length: 430)
Name: NF3772_high_37
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 19315882 - 19315580
Alignment:
| Q |
10 |
gcagagatgtaattgatatgtgtcgttgttgggagtttgggttgggcccagtcctctgagctgtgtcttgtttaaagtgaaaattaccctagaaacagta |
109 |
Q |
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| T |
19315882 |
gcagagatgcaattgatatgtgt---tgttgggagtttgggatgggcccagtcctctgagctgtgtcttgtttaaggtgaaaattaccctacaaaaagta |
19315786 |
T |
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| Q |
110 |
aaagtgcacccttataataacctaatttcaagtttcaaacaactacaagtttttatgtatttgatgatatctgaatttgaaaattgtcattcattttagt |
209 |
Q |
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| T |
19315785 |
aaagtgcacccttataataacctaatttcaagtttcaaacaactacaagtttttatgtatttgatgatatctgaatttgaaaattgtcattcattttagt |
19315686 |
T |
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| Q |
210 |
ccctctttaaacttcagtcaatatgatagtaataaggtggttaaagaggaaacnnnnnnnnntgtcatcactaatggatcaaattgaactcttctcttcc |
309 |
Q |
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| T |
19315685 |
ccctctttaaacttcagtcaatatgatagtaataaggtggttaaagaggaaacaaaaaaaaatgtcttcactaatggatcaaattgaactcttctcttcc |
19315586 |
T |
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| Q |
310 |
attaaa |
315 |
Q |
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| T |
19315585 |
attaaa |
19315580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 19315313 - 19315260
Alignment:
| Q |
363 |
atttaccatttagtagattttgaaaactagtttgtttacttacaatttcaaaac |
416 |
Q |
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| T |
19315313 |
atttaccatttagtagattttgaaaactagtttgtttacttacaatttcaaaac |
19315260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 19315551 - 19315498
Alignment:
| Q |
318 |
acaaagtgagtaaattaagtaacagtctattcaacttgggaacaaatttaccat |
371 |
Q |
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| T |
19315551 |
acaaagtgagtaaattaagtaacagtctattcaacttgggaacaaatttaccat |
19315498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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