View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_41 (Length: 409)
Name: NF3772_high_41
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 30874800 - 30874421
Alignment:
| Q |
14 |
atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtggttttcaaagagattaataaataaata--aact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
30874800 |
atatagacacaacaatttaacttcatcccatgattttaaaagtctacaattaactataattaatgtagttttcaaagagattaataaataaatataaact |
30874701 |
T |
|
| Q |
112 |
tacattgtttaatcccaccatgaatattttattgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30874700 |
tacattgtttaatcccaccatgaatattttattgttatgaatactttcctagttgtgagaatggtcgcaagttccaccactttatttgtttctctgtctc |
30874601 |
T |
|
| Q |
212 |
tctctttccccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttgaggtttgaatcattggacac |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30874600 |
tctcttttcccttccaatctcatcctattccgttttctctgcagtactcaattgatccatttgtttttctattcgttttgaggtttgaatcattggacac |
30874501 |
T |
|
| Q |
312 |
tcctaaatctaatactttcttttctatnnnnnnntttataattcctgtttacatataatttaattgttcattactattct |
391 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30874500 |
tcctaaatctaatactttcttttctataaaaaattttataattcctgtttacatataatttaattgttcattactattct |
30874421 |
T |
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