View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_46 (Length: 397)

Name: NF3772_high_46
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_46
NF3772_high_46
[»] chr2 (5 HSPs)
chr2 (233-390)||(4113735-4113892)
chr2 (1-158)||(4113500-4113662)
chr2 (1-63)||(29754169-29754231)
chr2 (7-58)||(4915939-4915989)
chr2 (4-63)||(43525488-43525547)
[»] chr7 (1 HSPs)
chr7 (1-64)||(3776442-3776505)
[»] chr5 (2 HSPs)
chr5 (1-61)||(1663121-1663181)
chr5 (4-66)||(14009732-14009794)
[»] chr4 (1 HSPs)
chr4 (7-63)||(49420621-49420676)
[»] chr8 (1 HSPs)
chr8 (4-63)||(12868228-12868287)
[»] chr6 (1 HSPs)
chr6 (28-64)||(26717276-26717312)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 233 - 390
Target Start/End: Original strand, 4113735 - 4113892
Alignment:
Q  233 tcataatacaagatttattatcaatcaagatagctaaatggattccatatcataagtgataacaacaaaatattaggtaataaaataggtacaagagggt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4113735 tcataatacaagatttattatcaatcaagatagctaaatggattccatatcataagtgataacaacaaaatattaggtaataaaataggtacaagagggt 4113834  T
Q  333 taacatttgttccaaggggtttccttgcaagccttttcctaacataacgcttcctttg 390  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  4113835 taacatttgtgccaaggggtttccttgcaagccttttcctaacataactcttcctttg 4113892  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 4113500 - 4113662
Alignment:
Q  1 ttattatatattagagttaattttgttggcccatcccagata-----tatttcctggctccgccactgcttaagcgttggagtgctaatatacttgtata 95  Q
    ||||||||||||| ||||||||||||||||||| ||||||||     ||||||||||||||||| |||||||||||||||||||||||||| |||||| |    
T  4113500 ttattatatattaaagttaattttgttggcccaccccagatatgatatatttcctggctccgccgctgcttaagcgttggagtgctaatatgcttgtaga 4113599  T
Q  96 cacatttctcctccaacatgaagactcaatctctgtcgcaccggatcaccatgaatttttgtc 158  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  4113600 cacatttctcctccaccatcaagactcaatctctgtcgcaccggatcaccatgaatttttgtc 4113662  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29754169 - 29754231
Alignment:
Q  1 ttattatatattagagttaattttgttggcccatcccagatatatttcctggctccgccactg 63  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29754169 ttattatatattagagttaattttgttggcccaccccagatatatttcctggctccgccactg 29754231  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 4915939 - 4915989
Alignment:
Q  7 tatattagagttaattttgttggcccatcccagatatatttcctggctccgc 58  Q
    ||||||||||||||||||||| |||||| ||||| |||||| ||||||||||    
T  4915939 tatattagagttaattttgttagcccat-ccagagatattttctggctccgc 4915989  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 43525488 - 43525547
Alignment:
Q  4 ttatatattagagttaattttgttggcccatcccagatatatttcctggctccgccactg 63  Q
    ||||||||||||||  |||||||||||||| ||| ||||| ||| || ||||||||||||    
T  43525488 ttatatattagagtatattttgttggcccacccccgatattttttctagctccgccactg 43525547  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3776505 - 3776442
Alignment:
Q  1 ttattatatattagagttaattttgttggcccatcccagatatatttcctggctccgccactgc 64  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  3776505 ttattatatattagagttaattttgttggtccaccccagatatatttcctggctccgtcactgc 3776442  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1663181 - 1663121
Alignment:
Q  1 ttattatatattagagttaattttgttggcccatcccagatatatttcctggctccgccac 61  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||    
T  1663181 ttattatatattagagttaattttgttggcccacccgagatatatttcaaggctccgccac 1663121  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 14009732 - 14009794
Alignment:
Q  4 ttatatattagagttaattttgttggcccatcccagatatatttcctggctccgccactgctt 66  Q
    ||||||||||||||  |||||||||||||| ||| ||||| ||| || |||||||||||||||    
T  14009732 ttatatattagagtatattttgttggcccacccccgatattttttctagctccgccactgctt 14009794  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 49420676 - 49420621
Alignment:
Q  7 tatattagagttaattttgttggcccatcccagatatatttcctggctccgccactg 63  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||    
T  49420676 tatattagagttaattt-gttggcccaccccagatatattttctggctccggcactg 49420621  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 12868287 - 12868228
Alignment:
Q  4 ttatatattagagttaattttgttggcccatcccagatatatttcctggctccgccactg 63  Q
    ||||||||||||||  |||||||||||||| ||| ||||| ||| || ||||||||||||    
T  12868287 ttatatattagagtatattttgttggcccacccccgatattttttctagctccgccactg 12868228  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 26717312 - 26717276
Alignment:
Q  28 ggcccatcccagatatatttcctggctccgccactgc 64  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  26717312 ggcccaccccagatttatttcctggctccgccactgc 26717276  T

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