View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_47 (Length: 397)
Name: NF3772_high_47
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 32616082 - 32615706
Alignment:
| Q |
17 |
ataaacagacattgatcagttttaccattttcaaa---------acaatgatctaagctcaatgtcatgcatatgttactagaaagaggaaattggccat |
107 |
Q |
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| T |
32616082 |
ataaacagacattgatcagttttaccattttcaaagagataatgacaatgatctaagctcaatgtcatgcatatgttactagaaagaggaaattggccat |
32615983 |
T |
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| Q |
108 |
ttggcatggagcactaattgctcatttaattagtggtcacttgttgggagtattcattaaaggacatagaaaagaaagtnnnnnnn-gtgtgatccattt |
206 |
Q |
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| T |
32615982 |
ttggcatggagcactaattgctcatttaattagtggtcacttgttgggagtattcattaaaggacatagaaaagaaagaaaaaaaaagtgtgatccattt |
32615883 |
T |
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| Q |
207 |
tgtggtttgtgattctaaatttgtgaaagtaaatgacattcttaaaccatctattacatcttcttttacacttca-tcttttagaaattca--tgtgttg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
32615882 |
tgtggtttgtgattctaaatttgtgaaagtaaatgacattcttaaaccatctattacatcttcttttacacttcatttttttagaaattcatgtgtgttg |
32615783 |
T |
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| Q |
304 |
tcaaaattaagatgagcttttgtattgtcaatatcaattgcaacatctatactcttatatatatgttgattaaataa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32615782 |
tcaaaattaagatgagcttttgtattgtcaatatcaattgcaacatctatactcttatatatatgttgattaaataa |
32615706 |
T |
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