View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_48 (Length: 396)
Name: NF3772_high_48
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 43947080 - 43946832
Alignment:
| Q |
6 |
agtcagggaagagaaggtctgataagcctgacaaaaaagaagtgtggccgggtcggccatgaaatccacggctaaggaggcacctagcttggctaagaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
43947080 |
agtcagggaagagaaggtctgataagcctgacaaaaaagaagtgtggccgtgtcggccatgaaatccacggctaaggaggcacctagtttgactaagaag |
43946981 |
T |
|
| Q |
106 |
tcaataaaattattactttcagggagggtgtaagcaaaagaaacatgtcaatcaaagttgatgagatcttttacagtagcatatttgtgaaatttaggag |
205 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43946980 |
tcaataaaactatttctttcacggagggtgtaagcaaaagaaacaagccaatcaaagttgatgagatcttttacagtagcatatttgtgaaatttaagag |
43946881 |
T |
|
| Q |
206 |
tggactcctttaagatatgaacaaaatggaggttgatcggtttaataaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43946880 |
tggactcctttaagatatgaacaaaatggaggttgatcggtttagtaaa |
43946832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 43940613 - 43940532
Alignment:
| Q |
273 |
gaaatgttacacgagcaatgtggaagatagctatagttgataataggtcgttttttcatattttacttgtttgtgacactaa |
354 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43940613 |
gaaatgtgacacgaacaatgtggaagatagctatagttgataatatgtcgttttttcatattttacttgtttgtgacactaa |
43940532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University