View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_50 (Length: 391)
Name: NF3772_high_50
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 49923280 - 49922908
Alignment:
| Q |
1 |
accaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaa-tcccacgagtaaaacaacctgacccagattcgtaaaatgcaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49923280 |
accaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaaatcccacgagtaaaacaacctgacccagattcgtaaaatgcaa |
49923181 |
T |
|
| Q |
100 |
aaagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaccagagttccatgatggacttagagc |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
49923180 |
aaagaaatgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaacagagttccatgatggacttagaac |
49923081 |
T |
|
| Q |
200 |
tggaatgagaaaatctagatccatgtgtgaaactatgtagttttcagtgagtataagatagtgtgactttgatttgatttaatatcaggttgagaatgct |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49923080 |
gggaatgagaaaatccagatccatgtgtgaaactatgcagttttcagtgagtataagatagtgtgactttgatttgatttaacatcaggttgagaatgct |
49922981 |
T |
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| Q |
300 |
atgctatgttgcatagagtgacaagaacttgggtaacagtgagtgttcaagatggaattctccgaatcgtttg |
372 |
Q |
| |
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| T |
49922980 |
atgctatgttgcatagagtgacaagaacttaggtaacagtgagtgttcaagatggaattctccgaatcgtttg |
49922908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 26777795 - 26778133
Alignment:
| Q |
1 |
accaggaacaagttttccagggagaatggatccaacaatggccaagtaagtaaaaaatcccacgagtaaaacaacctgacccagattcgtaaaatgcaaa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||| |||||||||||||||||| |||||||||| |
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| T |
26777795 |
accaggaacaagctttccagggagaatggatccaacaatggctaagtaagtaaaaaaacccgcaagtaaagcaacctgacccagattcgaaaaatgcaaa |
26777894 |
T |
|
| Q |
101 |
aagaagtgaaattgatgattgaattgtaataaatcattgaattaaagaaatgggttgtgagtagtttggactaccagagttccatgatggacttagagct |
200 |
Q |
| |
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|||| |||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |||| | ||||||||||||||| ||||||| |
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| T |
26777895 |
aagatatgaaattgatgacagaattggaataaatgattgaattaaagtaatgggttgtgagtagtttgaactaacggagttccatgatggaattagagcg |
26777994 |
T |
|
| Q |
201 |
ggaatgagaaaatctagatccatgtgtgaaactatgtagttttcagtgagtataagatagtgtgactttgatttgatttaatatc-aggttgagaatgct |
299 |
Q |
| |
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||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
26777995 |
tgaatgagaaaatccagatccatgtgtgacactatgcagttttcagtgagtataagatagtgtgac-----ttcgatttaatatcaaggttgagaatgc- |
26778088 |
T |
|
| Q |
300 |
atgctatgttgcatagagtgacaagaacttgggtaacagtgagtgttcaag |
350 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
26778089 |
------tgttgcagagagtgacaatgacttgggtaacagtgagtgttcaag |
26778133 |
T |
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