View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_59 (Length: 379)
Name: NF3772_high_59
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 31711266 - 31711617
Alignment:
| Q |
19 |
gctccttcttgtcgtaggagttatcaacatccaaaaccagaaccaacatgttatgctacaaacatgttttagaattagcaagaccaatacattattaagt |
118 |
Q |
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| T |
31711266 |
gctccttcttgtcgtaggagttatcaacatccaaaaccagaaccaacatgttatgctacaaacatgttttagaattagctagaccaatacattattaagt |
31711365 |
T |
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| Q |
119 |
atataaataaaagctgaattactacagaatgggacctgttctaaaatgcgcatgcatatataaaaatacatacgtcatcaactgatttttcaaccatgat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711366 |
atataaataaaagctgaattactacagaatgggacctgttctaaaatgcgcatgcatatataaaaatacatacgtcatcaactgatttttcaaccatgac |
31711465 |
T |
|
| Q |
219 |
acacaatctctatcaactccattccattcccctctcattattttcacaataaagaagnnnnnnncagccttttcttacaggcatgtttggttttgtttgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
31711466 |
acacaatctctatcaactccattccattcccctctcattattttcacaataaagaagaaaaaaacagccttttcttagaggcatgtttggttttgtttgt |
31711565 |
T |
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| Q |
319 |
atttagttttgtccttcctgacaaaaagatgtatatactttattccctttgc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711566 |
atttagttttgtccttcctgacaaaaagatgtatatactttattccctttgc |
31711617 |
T |
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