View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_60 (Length: 374)
Name: NF3772_high_60
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 20681123 - 20680766
Alignment:
| Q |
19 |
gcaactacgttcgcttgcctcctcgagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggc |
118 |
Q |
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| T |
20681123 |
gcaactacgttcgcttgcctcctcgagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagcttcagattcggtgatatctccggc |
20681024 |
T |
|
| Q |
119 |
gcctcgattaaagtagtcagccactcgcttcgagtcaatatcaaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20681023 |
gcctcgattaaagtagtcagccactcgcttcgagtcaacttcaaaatccaca-tttgatagccgtaattcattaacccaccgcatagcatgatacaatcc |
20680925 |
T |
|
| Q |
219 |
aagagcttctccgatatccactaagcacattggtgagaaccataaagttttgg----------------ctcttcgtcacgaatttatattccaatacca |
302 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |
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| T |
20680924 |
aagagcttcttcgatatccactaagcacattggtgagaaccataaagttttggcacgcacggactgcccctcttcatcatgaatgcatattccaatacca |
20680825 |
T |
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| Q |
303 |
cacctattcatagaagtcgaaaaagaggcatcgaagttgcatttcactcttccacgcct |
361 |
Q |
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| T |
20680824 |
cacctattcatagaagtcgaaaaagaggcatggacgttgcatttcactcttccacgcct |
20680766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 361
Target Start/End: Complemental strand, 16332866 - 16332530
Alignment:
| Q |
40 |
ctcgagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggcgcctcgattaaagtagtcagc |
139 |
Q |
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| T |
16332866 |
ctcgagagtttattaaaattgtagcacaaaattgtatattgttgtccataatagctccaaattcggtgatatctccggtgcctcgattaaagtagtcagc |
16332767 |
T |
|
| Q |
140 |
cactcgcttcgagtcaatatcaaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccac |
239 |
Q |
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||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
16332766 |
cactcgcttcgagtcaacttcaaaatccaca-tttggcagctgtaattcattaacccaccgcatagcatgatacaatccaagggcttctccaacatccac |
16332668 |
T |
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| Q |
240 |
taagcacattggtgagaaccataaagttttgg----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaa |
323 |
Q |
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| T |
16332667 |
taagcacattggtgagaatcataaagttttggcacgcacgaactgcccctcttcgtcaggaatgcatattccaataccacacctattcatagaagtcgag |
16332568 |
T |
|
| Q |
324 |
aaagaggcatcgaagttgcatttcactcttccacgcct |
361 |
Q |
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| T |
16332567 |
aaagaggcatcgacattgcatttcactcttccacgcct |
16332530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 48250405 - 48250452
Alignment:
| Q |
44 |
agagtttgttaaatttgtggaacaaaattgtatattgctatccataat |
91 |
Q |
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|||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
48250405 |
agagttcgataaatttgtggaacaaaactgtatattgctatccataat |
48250452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 30148035 - 30147704
Alignment:
| Q |
43 |
gagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctccggcgcctcgattaaagtagtcagccac |
142 |
Q |
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| T |
30148035 |
gagagtttgttaaacttgtggaacaaaactgtatattgctattcataatagctccaaattcggtgatatcttcgttgccccgattaaagtagtcagccac |
30147936 |
T |
|
| Q |
143 |
tcgcttcgagtcaatatcaaaatccacattttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaa |
242 |
Q |
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||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30147935 |
tcgcttcgaatcaacttcaaaatccaca-tttggaagccgtaattcattaacccacctcatagcatgatacaatccaagagcttctccgacatccactaa |
30147837 |
T |
|
| Q |
243 |
gcacattggtgagaaccataaagttttgg----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaa |
326 |
Q |
| |
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||||| ||||||||||| || ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
30147836 |
acacataggtgagaaccacaatgtttttgcgcgaacaaactgcccctcttcgtcacgaatacatattccaataccacacctattcatagaagccgaaaac |
30147737 |
T |
|
| Q |
327 |
gaggcatcgaagttgcatttcactcttccacgc |
359 |
Q |
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|||||||| | ||||||||||||||||||||| |
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| T |
30147736 |
gaggcatccacattgcatttcactcttccacgc |
30147704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 172 - 358
Target Start/End: Complemental strand, 33099057 - 33098855
Alignment:
| Q |
172 |
tttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgatatccactaagcacattggtgagaaccataaagttttgg |
271 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||| |
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| T |
33099057 |
tttggtagccgtaattcattaacccaccgcatagcatgatacaatccaagagcttctccgacatccattaagcacattggtgagaaccatacaaatttgg |
33098958 |
T |
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| Q |
272 |
----------------ctcttcgtcacgaatttatattccaataccacacctattcatagaagtcgaaaaagaggcatcgaagttgcatttcactcttcc |
355 |
Q |
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| T |
33098957 |
cacgcacgaactgcccctcttcgtcacgaatgcatattccaatacctcacctattcatagaaatcgaaaaagaggcatcgacattgcatttcactcttcc |
33098858 |
T |
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| Q |
356 |
acg |
358 |
Q |
| |
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||| |
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| T |
33098857 |
acg |
33098855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 27534588 - 27534548
Alignment:
| Q |
232 |
atatccactaagcacattggtgagaaccataaagttttggc |
272 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||| |
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| T |
27534588 |
atatccacaaaacacatgggtgagaaccataaagttttggc |
27534548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17459415 - 17459343
Alignment:
| Q |
43 |
gagagtttgttaaatttgtggaacaaaattgtatattgctatccataatagctccagattcggtgatatctcc |
115 |
Q |
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| T |
17459415 |
gagagtttgttaagtaagtgttacaaaagtggatattactatccataatagaaccaaattcggtgatatctcc |
17459343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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