View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_61 (Length: 374)
Name: NF3772_high_61
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_61 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 43090542 - 43090911
Alignment:
| Q |
1 |
taacataaaattttcaatacactcccttctattagttaaatttcaaatgggtaaatccaatccaaattacgtaagtctcnnnnnnnttcacgaga-cttg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||| |
|
|
| T |
43090542 |
taacataaaattttcaatacactcccttttattagttaaatttcaaatgggtaaatccaa-----attacgtaagtctccaaaaatttcaagagaacttg |
43090636 |
T |
|
| Q |
100 |
tgcaaatttcaacaaactaaaagaagtgtgtcgagaagcaaatgttaaagagtgtgttgctacaatttcgcgacatagttgtaagatgtagttttgtcat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43090637 |
tgcaaatttcaacaaactaaaagaagtgtgttgagaagcgaatgttaaagagtgtgttgctacaatttcgcgacataattgtaagatgtagttttgtcat |
43090736 |
T |
|
| Q |
200 |
ttatatacatatgaaatatgatgtgtaaaatatacaagtacaagttaaatcgagccaaatttgttggcccaaacttgaataataccatgaacttctttcc |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090737 |
ttatatacatatgaaatatgatgtttaaaatatacaagtacaagttaaatcgagccaaatttgttggcccaaacttgaataataccatgaacttctttcc |
43090836 |
T |
|
| Q |
300 |
gctaataatatactgttagttgactactaatgcacacaacgctaaactaattgtaacgagtgaatcaaatcacca |
374 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43090837 |
gctaataatatattgttagttgactactaatgcacacaacactaaactaattgtaacgagtgaatcaaatcacca |
43090911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University