View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_62 (Length: 374)
Name: NF3772_high_62
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_62 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 26631791 - 26632164
Alignment:
| Q |
1 |
tctctcccttaaattagagtttgtcctttttcctcctttttagtacttttagaagaatgatcttgttcatttaccgcaaatatacctaaacgtaacctca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26631791 |
tctctcccttaaattagagtttgtcttttttcctcttttttagtacttttagaagaatgatcttgttcatttaccgcaaatatgcctaaacgtaacctca |
26631890 |
T |
|
| Q |
101 |
atacatattttacttgagaaccaaaaaactcaactagttctccaatcaaaacacacaattatgaaaatttaaaactttctatgtcaaagttcttaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26631891 |
atacatattttacttgagaaccaaaaaactcaactagttctccaatcaaaacacacaattatgaaaatttaaaactttctatgtcaaagttcttaaacaa |
26631990 |
T |
|
| Q |
201 |
atatatagaacacaatcacacactcttctctatgcatcttggaacatcagagtataaatcagcatgcaacgtataacnnnnnnnttattttagaaaccga |
300 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26631991 |
atatctagatcacaatcacacactcttctctatgcatcttggaacatcagagtataaatcagcatgcaacgtataacaaaaaaattattttagaaaccga |
26632090 |
T |
|
| Q |
301 |
tactcaaataaagctagtgcaacataaatgatcaacaaataaaggtaaacatgccctataaaaggaaaagaaaa |
374 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
26632091 |
tactcaaataaagctagtgcagcataaatgatcaacaaacaaaggtaaacatgtcctataaaaggaaaagaaaa |
26632164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University