View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_63 (Length: 371)
Name: NF3772_high_63
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 41637825 - 41637502
Alignment:
| Q |
1 |
acaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgacggcaagagaggacacgaagcaaaagctac |
100 |
Q |
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| T |
41637825 |
acaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgac-------------acgaagcaaaagctac |
41637739 |
T |
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| Q |
101 |
agggacgtgattcatagatgtaggaatcagcgtgagttaagtcatgttgtatttcacgaaatttcgttgaaagtatttttaaaagtttggttgagagtga |
200 |
Q |
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|||||||||||||||||||||||| || ||||||||| || |||| ||| |||||||| ||||||||||||||||||| |
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| T |
41637738 |
agggacgtgattcatagatgtagggat---------------------gtatttcaccaagtttcattgggggtatttttgaaagtttggttgagagtga |
41637660 |
T |
|
| Q |
201 |
gccaattttaatagaaaaatagcaatttttcaaaaacttttttgccttaaacaagcctccaatttaaataa---tatatagacttgttccatgttatgcg |
297 |
Q |
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|||||||||||| ||| |||| ||||||||||||| | || |||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
41637659 |
gccaattttaatggaacaataacaatttttcaaaa--taattcgccttaaataggcctccaatttaaataatactatgtagacttgttccatgttatgcg |
41637562 |
T |
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| Q |
298 |
agaaagcaattaatagtaaggtgatagaatgnnnnnnnnngtactgttggtcacaggttc |
357 |
Q |
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| T |
41637561 |
aaaaagcaattaatagcaaggtggtagaatgtctttttttgtactgttggtcacaggttc |
41637502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 41638651 - 41638772
Alignment:
| Q |
1 |
acaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgacggcaagagaggacacgaagcaaaagctac |
100 |
Q |
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| T |
41638651 |
acaagaggtaccggtcagagcaggtagaagttgaaggagctacggatgacggtaccaa--tccaaaatgacggcaagagagggcacgaagcaaaagctac |
41638748 |
T |
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| Q |
101 |
agggacgtgattcatagatgtagg |
124 |
Q |
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||| | ||||||||| |||||||| |
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| T |
41638749 |
aggcatgtgattcattgatgtagg |
41638772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 50408201 - 50408315
Alignment:
| Q |
1 |
acaagaggtaccgatcagagcaggtagaagttgaaggagcttcggatgagatgacggtggtccaaaatgacggcaagagagga---cacgaagcaaaagc |
97 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
50408201 |
acaagaggtaccgatcagagcaggttgaagttgaaggagctacggctgagatgacggtggtccaaaatgacggcaagagaggaaaggaagaagcaaaagc |
50408300 |
T |
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| Q |
98 |
tacagggacgtgatt |
112 |
Q |
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||||| || |||||| |
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| T |
50408301 |
tacagtgatgtgatt |
50408315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 41130491 - 41130455
Alignment:
| Q |
255 |
gcctccaatttaaataatatatagacttgttccatgt |
291 |
Q |
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||||||||||||||||||||||||||| ||| ||||| |
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| T |
41130491 |
gcctccaatttaaataatatatagactcgtttcatgt |
41130455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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