View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_64 (Length: 370)
Name: NF3772_high_64
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 190 - 351
Target Start/End: Original strand, 34847592 - 34847753
Alignment:
| Q |
190 |
taattgatgtgaagaaaaccaacctcaaagttatgtgctggtccatatttggtatatctgtcagagaaaaatgaaaggcttcagaccaagaaagctgtct |
289 |
Q |
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| T |
34847592 |
taattgatgtgaagaaaaccaacctcaaagttatatgctggtccatatttggtatatctgtcagagcaaaatgaaaggcttcagaccaagaaagctgtct |
34847691 |
T |
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| Q |
290 |
tagattggtagcacatggattcccccatctgtatgtttttggagacaaattaaagacagttt |
351 |
Q |
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| T |
34847692 |
tagattggtagcacatggattcccccatctgtatgtttttggagacaaattaaagacagttt |
34847753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 34847409 - 34847521
Alignment:
| Q |
7 |
gtttcaatgtgttgaatgtatcaatcccagacataatttcttttttaggtttctcatcaaatgtcctaagagtacttgttagtattttctaataagtaaa |
106 |
Q |
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| T |
34847409 |
gtttcaatgtgttgaatatatcaatctcatacattatttcttttttaggcttctcatcaaatatcctaagagcacttgttagcattttctaataagtaaa |
34847508 |
T |
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| Q |
107 |
tgtgctaaagttt |
119 |
Q |
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| T |
34847509 |
tgtgctaaagttt |
34847521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 752208 - 752258
Alignment:
| Q |
5 |
aagtttcaatgtgttgaatgtatcaatccc-agacataatttcttttttag |
54 |
Q |
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| T |
752208 |
aagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttag |
752258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8871240 - 8871210
Alignment:
| Q |
1 |
ttttaagtttcaatgtgttgaatgtatcaat |
31 |
Q |
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| T |
8871240 |
ttttaagtttcaatgtgttgaatgtatcaat |
8871210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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