View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_65 (Length: 369)
Name: NF3772_high_65
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 38894741 - 38895080
Alignment:
| Q |
17 |
agaatttatttccaaacacccaattttcatgaatctcatgcaaattactattattagccaatattgtgtcatgagatgtttgagacatccaaagagataa |
116 |
Q |
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| T |
38894741 |
agaatttatttccaaacacccaattttcatgaatctcatgcaaattactattattagccaatattgtgtcatgagatgtttgagacatccaaagagataa |
38894840 |
T |
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| Q |
117 |
acctgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctgtgttagggacaagagaattt |
216 |
Q |
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| T |
38894841 |
acctgacctagatgtttgattagttgtttcatggtttgtgcatgagattggtttgaaaattgaagaaaaatgagttcctatgttagggacaagagaattt |
38894940 |
T |
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| Q |
217 |
tgcataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattctagctgtttcttctgctaagg |
316 |
Q |
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| T |
38894941 |
tgcataatgttgtaattaccaatgttgttacctcccattcctaataatgagttgtttatgtttgttgatccatttattctagctgtttcttctgctaagg |
38895040 |
T |
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| Q |
317 |
catcacaaaatgccctgtgagtgacaaagctatccctcct |
356 |
Q |
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| T |
38895041 |
catcacaaaatgccctgtgagtgacaaagctatccctcct |
38895080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 30517340 - 30517380
Alignment:
| Q |
298 |
gctgtttcttctgctaaggcatcacaaaatgccctgtgagt |
338 |
Q |
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| T |
30517340 |
gctgtttcttctgctaaggcatcacaaaaggctctgtgagt |
30517380 |
T |
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