View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_77 (Length: 335)

Name: NF3772_high_77
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_77
NF3772_high_77
[»] chr4 (7 HSPs)
chr4 (23-323)||(45738578-45738878)
chr4 (23-142)||(45733334-45733453)
chr4 (261-323)||(45733108-45733170)
chr4 (173-248)||(35723391-35723467)
chr4 (188-239)||(20521871-20521922)
chr4 (188-238)||(12077815-12077865)
chr4 (190-238)||(20743302-20743350)
[»] chr7 (2 HSPs)
chr7 (173-239)||(32308106-32308172)
chr7 (173-239)||(22868028-22868094)
[»] chr1 (4 HSPs)
chr1 (174-239)||(6427336-6427401)
chr1 (190-239)||(2896145-2896194)
chr1 (190-239)||(36878447-36878496)
chr1 (191-239)||(9709806-9709854)
[»] chr8 (2 HSPs)
chr8 (173-233)||(31236584-31236644)
chr8 (192-244)||(13844622-13844674)
[»] chr2 (2 HSPs)
chr2 (188-236)||(18420456-18420504)
chr2 (190-238)||(21782842-21782890)
[»] chr6 (5 HSPs)
chr6 (173-239)||(7265600-7265666)
chr6 (171-236)||(19040341-19040406)
chr6 (188-221)||(32299279-32299312)
chr6 (173-217)||(9617442-9617486)
chr6 (173-217)||(30866151-30866195)
[»] chr5 (2 HSPs)
chr5 (190-248)||(28588698-28588756)
chr5 (188-244)||(31084304-31084360)
[»] scaffold0085 (1 HSPs)
scaffold0085 (173-217)||(26401-26445)
[»] chr3 (1 HSPs)
chr3 (188-232)||(13807162-13807206)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 45738878 - 45738578
Alignment:
Q  23 cgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctctagacgtcgttgagcttgttgtatgtattcatcat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738878 cgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctctagacgtcgttgagcttgttgtatgtattcatcat 45738779  T
Q  123 tcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatacaatgaaattgaattatgtgattttctcatattattatcagt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45738778 tcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatacaatgaaattgaattatatgattttctcatattattatcagt 45738679  T
Q  223 ctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtttcatagctttcttctgttttgaatgtgattctgataataatcattgatcacaggtt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  45738678 ctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgttcataggtt 45738579  T
Q  323 c 323  Q
    |    
T  45738578 c 45738578  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 45733453 - 45733334
Alignment:
Q  23 cgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctctagacgtcgttgagcttgttgtatgtattcatcat 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||     
T  45733453 cgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctctagacgtcgttgagcttgttgtatgtattcatcac 45733354  T
Q  123 tcacactatttatcactttc 142  Q
    ||||| ||||||||||||||    
T  45733353 tcacaatatttatcactttc 45733334  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 45733170 - 45733108
Alignment:
Q  261 catgtttcatagctttcttctgttttgaatgtgattctgataataatcattgatcacaggttc 323  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  45733170 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttc 45733108  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 35723391 - 35723467
Alignment:
Q  173 gacacatacaatgaaattgaattatgtg-attttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 248  Q
    |||||||| ||| | ||||||||||||| ||||||||| ||||||| | || | |||||||||||||||||||||||    
T  35723391 gacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtcatgtcgtgt 35723467  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 20521871 - 20521922
Alignment:
Q  188 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||||||||||||| ||| ||||||||| || | ||||||||||||||    
T  20521871 attgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 12077865 - 12077815
Alignment:
Q  188 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 238  Q
    |||||||||||||||||||||| ||||||| |||| | | |||||||||||    
T  12077865 attgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgt 12077815  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 20743302 - 20743350
Alignment:
Q  190 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 238  Q
    |||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  20743302 tgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 32308172 - 32308106
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 22868094 - 22868028
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||| ||| | | ||||||||||||||||||||||||||||   || | ||||||||||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 6427401 - 6427336
Alignment:
Q  174 acacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    ||||||| ||| | |||||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 2896145 - 2896194
Alignment:
Q  190 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 36878496 - 36878447
Alignment:
Q  190 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  36878496 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 9709854 - 9709806
Alignment:
Q  191 gaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    ||||||||||||||||||| ||||||| | || ||||| ||||||||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtc 9709806  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 31236584 - 31236644
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtc 233  Q
    |||||||| ||| | |||||||||||||||||||||| ||||||| |||| | ||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 13844622 - 13844674
Alignment:
Q  192 aattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 244  Q
    |||||||||||||||||| ||||||| |||| | |||||||| ||||| ||||    
T  13844622 aattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 18420456 - 18420504
Alignment:
Q  188 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 236  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||||||    
T  18420456 attgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 21782842 - 21782890
Alignment:
Q  190 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 238  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  21782842 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 7265600 - 7265666
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 239  Q
    |||||||| ||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 19040406 - 19040341
Alignment:
Q  171 cagacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 236  Q
    |||||||||| ||| | | |||||||||||||||||||| ||||||| | || | |||||||||||    
T  19040406 cagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 19040341  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 32299312 - 32299279
Alignment:
Q  188 attgaattatgtgattttctcatattattatcag 221  Q
    |||||||||||||||||||||| |||||||||||    
T  32299312 attgaattatgtgattttctcaaattattatcag 32299279  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 9617486 - 9617442
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattatta 217  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  9617486 gacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 30866151 - 30866195
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattatta 217  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 28588698 - 28588756
Alignment:
Q  190 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 248  Q
    |||||||||||||||||||| ||||||| | || | ||||||||| ||| |||||||||    
T  28588698 tgaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgttatgtcgtgt 28588756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 31084360 - 31084304
Alignment:
Q  188 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 244  Q
    |||||||||||||||||| ||| ||||||| | || | |||||||||||||| ||||    
T  31084360 attgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 26445 - 26401
Alignment:
Q  173 gacacatacaatgaaattgaattatgtgattttctcatattatta 217  Q
    |||||||| || || |||||||||||||||||||||| |||||||    
T  26445 gacacatataacgacattgaattatgtgattttctcaaattatta 26401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 13807206 - 13807162
Alignment:
Q  188 attgaattatgtgattttctcatattattatcagtctaggcgtgt 232  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgttggcgtgt 13807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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