View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_79 (Length: 333)
Name: NF3772_high_79
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 16071409 - 16071081
Alignment:
| Q |
1 |
tggtatagtccccaatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttatatcataatcatgggaggccaacat |
100 |
Q |
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| T |
16071409 |
tggtatagtccccaatatttgtaattcttattttcctgtgatttattaataataattttatagtgctacaagttatatcataatcatgggaggccaacat |
16071310 |
T |
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| Q |
101 |
agtatagatgacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatca |
200 |
Q |
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| T |
16071309 |
agtatagatgacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatca |
16071210 |
T |
|
| Q |
201 |
atgttacataattattagtctcttgaataaattacctattctacttctaattttagcatataaaattgttaagtaatataaaattaataaatatttgtat |
300 |
Q |
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| T |
16071209 |
atgttacataattattagtctcttgaataaattacctattctacttctaattttagcatataaaattgttaagtaatataaaattaataaatatttgtat |
16071110 |
T |
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| Q |
301 |
gtgataaaagaatcaaagaataatctacc |
329 |
Q |
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| T |
16071109 |
gtgataaaagaatcaaagaataatgtacc |
16071081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 16083994 - 16083776
Alignment:
| Q |
10 |
ccccaatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttatatcataatcatgggaggccaacatagtatagat |
109 |
Q |
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| T |
16083994 |
ccccaatatttgtaattattattttcctgtgatttattaataataattttatagtgcttcaagttatatcataatcatgggaggccaacataatatagat |
16083895 |
T |
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| Q |
110 |
gacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgttacat |
209 |
Q |
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| T |
16083894 |
gacatgtttgtcacttacactttgttttttcttttataaatgtttcgtcaacctttaaatctctttgacaataacaaaataaaaattaacaatgttacat |
16083795 |
T |
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| Q |
210 |
aattattagtctcttgaat |
228 |
Q |
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|||||| |||| ||||||| |
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| T |
16083794 |
aattatcagtcacttgaat |
16083776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 16054490 - 16054306
Alignment:
| Q |
13 |
caatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttata--tcataatcatgggaggccaacatagtatagatg |
110 |
Q |
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| T |
16054490 |
caatatttgtaattttcatttttcatttatttatttataataattttagagtgctgcaaattatagattataataatgggaagccaacatagtttagatg |
16054391 |
T |
|
| Q |
111 |
acatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaat |
195 |
Q |
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| T |
16054390 |
tcaagtttgtcatttgcactttgttttttcttgaaaaaatgtttcgcctgcctttaaatctttttgacaataacaatataaaaat |
16054306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 16028155 - 16027942
Alignment:
| Q |
14 |
aatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttata--tcataatcatg--ggaggccaacatagtatagat |
109 |
Q |
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||||||| ||||| | ||||| || | |||||||||||||||||||| |||||| ||| ||||| | |||||||| | ||||||||||||| ||||| |
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| T |
16028155 |
aatatttctaattctcatttttcttttatttattaataataattttacattgctgcaaattatagattataatcatatcgaaggccaacatagtttagat |
16028056 |
T |
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| Q |
110 |
gacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgt---ta |
206 |
Q |
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| T |
16028055 |
gtcatgtatgtcattttcactttgtttttgctttaaaaaatatttctcttgccattaaatctctttgaaaagaacaatataaaaaataacaatgtcaata |
16027956 |
T |
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| Q |
207 |
cataattattagtc |
220 |
Q |
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| T |
16027955 |
cataatgattagtc |
16027942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 16356966 - 16356858
Alignment:
| Q |
74 |
tatatcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctct |
173 |
Q |
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| T |
16356966 |
tatattataatcatggaaagccaacaaagtttagatgtcatgtttgtcattttcactttgttttcactttaaaaaatgtttcgcctatctttaaatctcc |
16356867 |
T |
|
| Q |
174 |
ttgacaaga |
182 |
Q |
| |
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||||||||| |
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| T |
16356866 |
ttgacaaga |
16356858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 16083709 - 16083667
Alignment:
| Q |
237 |
tattctacttctaattttagcatataaaattgttaagtaatat |
279 |
Q |
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|||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
16083709 |
tattctacttctaaatttagcgtataaaattgttgagtaatat |
16083667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7771762 - 7771838
Alignment:
| Q |
1 |
tggtatagtccccaatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttata |
77 |
Q |
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|||| ||||||||||||||||||||| | |||||||| | | |||||||||||||||||| | |||| ||| ||||| |
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| T |
7771762 |
tggtctagtccccaatatttgtaattatcattttccttttaattattaataataattttagagtgctgcaaattata |
7771838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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