View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_80 (Length: 333)

Name: NF3772_high_80
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_80
NF3772_high_80
[»] chr7 (9 HSPs)
chr7 (152-306)||(5806246-5806401)
chr7 (305-333)||(5732059-5732087)
chr7 (305-333)||(6799648-6799676)
chr7 (305-333)||(10227485-10227513)
chr7 (305-333)||(17896477-17896505)
chr7 (305-333)||(33174036-33174064)
chr7 (305-333)||(33921760-33921788)
chr7 (305-333)||(46563358-46563386)
chr7 (305-333)||(47408342-47408370)
[»] chr8 (10 HSPs)
chr8 (299-333)||(18842758-18842792)
chr8 (304-333)||(8453218-8453247)
chr8 (304-333)||(34982058-34982087)
chr8 (304-333)||(35052282-35052311)
chr8 (305-333)||(2888451-2888479)
chr8 (305-333)||(14061132-14061160)
chr8 (305-333)||(15596573-15596601)
chr8 (305-333)||(18291692-18291720)
chr8 (301-333)||(23848788-23848820)
chr8 (305-333)||(38482775-38482803)
[»] chr4 (18 HSPs)
chr4 (300-333)||(23621572-23621605)
chr4 (301-333)||(53599766-53599798)
chr4 (302-333)||(354198-354229)
chr4 (302-333)||(33755012-33755043)
chr4 (302-333)||(44013894-44013925)
chr4 (301-332)||(52061791-52061822)
chr4 (303-332)||(36408985-36409014)
chr4 (303-332)||(36423151-36423180)
chr4 (304-333)||(44217938-44217967)
chr4 (305-333)||(8735621-8735649)
chr4 (305-333)||(9746231-9746259)
chr4 (305-333)||(9834512-9834540)
chr4 (305-333)||(22828385-22828413)
chr4 (305-333)||(38009750-38009778)
chr4 (305-333)||(38027559-38027587)
chr4 (305-333)||(38617293-38617321)
chr4 (305-333)||(49089138-49089166)
chr4 (305-333)||(56576088-56576116)
[»] chr1 (14 HSPs)
chr1 (300-333)||(51613640-51613673)
chr1 (300-332)||(35700350-35700382)
chr1 (302-333)||(1024785-1024816)
chr1 (302-333)||(13566908-13566939)
chr1 (302-333)||(32168289-32168320)
chr1 (302-333)||(36318581-36318612)
chr1 (305-333)||(12231051-12231079)
chr1 (305-333)||(18033806-18033834)
chr1 (305-333)||(29830982-29831010)
chr1 (305-333)||(30686640-30686668)
chr1 (305-333)||(32348206-32348234)
chr1 (305-333)||(35531275-35531303)
chr1 (300-332)||(37437028-37437060)
chr1 (305-333)||(43500735-43500763)
[»] chr6 (5 HSPs)
chr6 (301-333)||(17193387-17193419)
chr6 (303-333)||(22050277-22050307)
chr6 (305-333)||(17251239-17251267)
chr6 (297-333)||(23777525-23777561)
chr6 (305-333)||(27605416-27605444)
[»] chr5 (14 HSPs)
chr5 (299-333)||(1087907-1087941)
chr5 (303-333)||(2673956-2673986)
chr5 (304-333)||(6008096-6008125)
chr5 (300-333)||(25785864-25785897)
chr5 (305-333)||(4175460-4175488)
chr5 (305-333)||(4427385-4427413)
chr5 (305-333)||(4985155-4985183)
chr5 (305-333)||(7579647-7579675)
chr5 (305-333)||(9127331-9127359)
chr5 (305-333)||(16124240-16124268)
chr5 (305-333)||(18437303-18437331)
chr5 (305-333)||(25344171-25344199)
chr5 (305-333)||(38910484-38910512)
chr5 (305-333)||(39073255-39073283)
[»] chr2 (12 HSPs)
chr2 (303-333)||(44360662-44360692)
chr2 (298-331)||(3363815-3363848)
chr2 (304-333)||(15182986-15183015)
chr2 (301-333)||(8443907-8443939)
chr2 (305-333)||(10812428-10812456)
chr2 (305-333)||(11222302-11222330)
chr2 (304-332)||(13849700-13849728)
chr2 (305-333)||(15893566-15893594)
chr2 (305-333)||(26342809-26342837)
chr2 (305-333)||(34357407-34357435)
chr2 (301-333)||(34399431-34399463)
chr2 (305-333)||(36375802-36375830)
[»] scaffold0002 (1 HSPs)
scaffold0002 (301-330)||(148535-148564)
[»] chr3 (12 HSPs)
chr3 (301-330)||(13158424-13158453)
chr3 (301-333)||(2642931-2642963)
chr3 (305-333)||(2858566-2858594)
chr3 (305-333)||(20105402-20105430)
chr3 (305-333)||(29803877-29803905)
chr3 (305-333)||(33491128-33491156)
chr3 (305-333)||(40139831-40139859)
chr3 (305-333)||(41351183-41351211)
chr3 (305-333)||(41425858-41425886)
chr3 (305-333)||(45101347-45101375)
chr3 (301-333)||(49123751-49123783)
chr3 (305-333)||(51219082-51219110)
[»] scaffold0280 (1 HSPs)
scaffold0280 (305-333)||(8383-8411)
[»] scaffold0009 (1 HSPs)
scaffold0009 (305-333)||(147111-147139)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 5806246 - 5806401
Alignment:
Q  152 aacagcaagcataaggtttggaacttttgt-gttgaaaactacatcatttctcattttccaaatagtccataaagatagactaaataattgtgtaacctg 250  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5806246 aacagcaagcataaggtttggaactttttttgttgaaaactacatcatttctcattttctaaatagtccataaagatagactaaataattgtgtaacctg 5806345  T
Q  251 caaatttggattcgacagccattgcaacatccattgggataagtgcatgtttatta 306  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5806346 caaatttggattcgacagccattgcaacatccgttgggataagtgcatgtttatta 5806401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 5732059 - 5732087
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  5732059 tactacctccgttcctttttaattgtcac 5732087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 6799676 - 6799648
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  6799676 tactacctccgttcctttttaattgtcac 6799648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 10227513 - 10227485
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  10227513 tactacctccgttcctttttaattgtcac 10227485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 17896477 - 17896505
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  17896477 tactacctccgttcctttttaattgtcac 17896505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 33174064 - 33174036
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  33174064 tactacctccgttcctttttaattgtcac 33174036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 33921760 - 33921788
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  33921760 tactacctccgttcctttttaattgtcac 33921788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 46563386 - 46563358
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  46563386 tactacctccgttcctttttaattgtcac 46563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 47408370 - 47408342
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  47408370 tactacctccgttcctttttaattgtcac 47408342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 18842792 - 18842758
Alignment:
Q  299 gtttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||||||    
T  18842792 gtttattactacctccgttcctttttaattgtcac 18842758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 8453218 - 8453247
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  8453218 ttactacctccgttcctttttaattgtcac 8453247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 34982087 - 34982058
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  34982087 ttactacctccgttcctttttaattgtcac 34982058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 35052311 - 35052282
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  35052311 ttactacctccgttcctttttaattgtcac 35052282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 2888451 - 2888479
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  2888451 tactacctccgttcctttttaattgtcac 2888479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 14061132 - 14061160
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  14061132 tactacctccgttcctttttaattgtcac 14061160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 15596601 - 15596573
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  15596601 tactacctccgttcctttttaattgtcac 15596573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 18291720 - 18291692
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  18291720 tactacctccgttcctttttaattgtcac 18291692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 23848820 - 23848788
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||| ||||||    
T  23848820 ttattactacctccgttcctttttaagtgtcac 23848788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 38482775 - 38482803
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  38482775 tactacctccgttcctttttaattgtcac 38482803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 23621572 - 23621605
Alignment:
Q  300 tttattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||||    
T  23621572 tttattactacctccgttcctttttaattgtcac 23621605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 53599766 - 53599798
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||||    
T  53599766 ttattactacctccgttcctttttaattgtcac 53599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 354229 - 354198
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  354229 tattactacctccgttcctttttaattgtcac 354198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 33755012 - 33755043
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  33755012 tattactacctccgttcctttttaattgtcac 33755043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 44013894 - 44013925
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  44013894 tattactacctccgttcctttttaattgtcac 44013925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 332
Target Start/End: Complemental strand, 52061822 - 52061791
Alignment:
Q  301 ttattactacctccgttcctttttaattgtca 332  Q
    ||||||||||||||||||||||||||||||||    
T  52061822 ttattactacctccgttcctttttaattgtca 52061791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Complemental strand, 36409014 - 36408985
Alignment:
Q  303 attactacctccgttcctttttaattgtca 332  Q
    ||||||||||||||||||||||||||||||    
T  36409014 attactacctccgttcctttttaattgtca 36408985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Complemental strand, 36423180 - 36423151
Alignment:
Q  303 attactacctccgttcctttttaattgtca 332  Q
    ||||||||||||||||||||||||||||||    
T  36423180 attactacctccgttcctttttaattgtca 36423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 44217967 - 44217938
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  44217967 ttactacctccgttcctttttaattgtcac 44217938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 8735649 - 8735621
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  8735649 tactacctccgttcctttttaattgtcac 8735621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 9746231 - 9746259
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  9746231 tactacctccgttcctttttaattgtcac 9746259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 9834540 - 9834512
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  9834540 tactacctccgttcctttttaattgtcac 9834512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 22828385 - 22828413
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  22828385 tactacctccgttcctttttaattgtcac 22828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 38009750 - 38009778
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  38009750 tactacctccgttcctttttaattgtcac 38009778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 38027559 - 38027587
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  38027559 tactacctccgttcctttttaattgtcac 38027587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 38617293 - 38617321
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  38617293 tactacctccgttcctttttaattgtcac 38617321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 49089166 - 49089138
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  49089166 tactacctccgttcctttttaattgtcac 49089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 56576088 - 56576116
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  56576088 tactacctccgttcctttttaattgtcac 56576116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 51613673 - 51613640
Alignment:
Q  300 tttattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||||    
T  51613673 tttattactacctccgttcctttttaattgtcac 51613640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 35700350 - 35700382
Alignment:
Q  300 tttattactacctccgttcctttttaattgtca 332  Q
    |||||||||||||||||||||||||||||||||    
T  35700350 tttattactacctccgttcctttttaattgtca 35700382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 1024816 - 1024785
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  1024816 tattactacctccgttcctttttaattgtcac 1024785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 13566939 - 13566908
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  13566939 tattactacctccgttcctttttaattgtcac 13566908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 32168289 - 32168320
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  32168289 tattactacctccgttcctttttaattgtcac 32168320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 36318612 - 36318581
Alignment:
Q  302 tattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||||    
T  36318612 tattactacctccgttcctttttaattgtcac 36318581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 12231051 - 12231079
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  12231051 tactacctccgttcctttttaattgtcac 12231079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 18033806 - 18033834
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  18033806 tactacctccgttcctttttaattgtcac 18033834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 29831010 - 29830982
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  29831010 tactacctccgttcctttttaattgtcac 29830982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 30686668 - 30686640
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  30686668 tactacctccgttcctttttaattgtcac 30686640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 32348234 - 32348206
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  32348234 tactacctccgttcctttttaattgtcac 32348206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 35531275 - 35531303
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  35531275 tactacctccgttcctttttaattgtcac 35531303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 37437028 - 37437060
Alignment:
Q  300 tttattactacctccgttcctttttaattgtca 332  Q
    |||||||||||||| ||||||||||||||||||    
T  37437028 tttattactacctctgttcctttttaattgtca 37437060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 43500763 - 43500735
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  43500763 tactacctccgttcctttttaattgtcac 43500735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 17193419 - 17193387
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||||    
T  17193419 ttattactacctccgttcctttttaattgtcac 17193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 22050307 - 22050277
Alignment:
Q  303 attactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||    
T  22050307 attactacctccgttcctttttaattgtcac 22050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 17251239 - 17251267
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  17251239 tactacctccgttcctttttaattgtcac 17251267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 23777561 - 23777525
Alignment:
Q  297 atgtttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  23777561 atgtttattattaccttcgttcctttttaattgtcac 23777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 27605416 - 27605444
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  27605416 tactacctccgttcctttttaattgtcac 27605444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 1087907 - 1087941
Alignment:
Q  299 gtttattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||| |||||||||||||||    
T  1087907 gtttattactacctccgtttctttttaattgtcac 1087941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 2673956 - 2673986
Alignment:
Q  303 attactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||    
T  2673956 attactacctccgttcctttttaattgtcac 2673986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 6008125 - 6008096
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  6008125 ttactacctccgttcctttttaattgtcac 6008096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 25785864 - 25785897
Alignment:
Q  300 tttattactacctccgttcctttttaattgtcac 333  Q
    |||| |||||||||||||||||||||||||||||    
T  25785864 tttaatactacctccgttcctttttaattgtcac 25785897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 4175460 - 4175488
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  4175460 tactacctccgttcctttttaattgtcac 4175488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 4427385 - 4427413
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  4427385 tactacctccgttcctttttaattgtcac 4427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 4985155 - 4985183
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  4985155 tactacctccgttcctttttaattgtcac 4985183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 7579647 - 7579675
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  7579647 tactacctccgttcctttttaattgtcac 7579675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 9127331 - 9127359
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  9127331 tactacctccgttcctttttaattgtcac 9127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 16124240 - 16124268
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  16124240 tactacctccgttcctttttaattgtcac 16124268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 18437303 - 18437331
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  18437303 tactacctccgttcctttttaattgtcac 18437331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 25344199 - 25344171
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  25344199 tactacctccgttcctttttaattgtcac 25344171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 38910512 - 38910484
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  38910512 tactacctccgttcctttttaattgtcac 38910484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 39073283 - 39073255
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  39073283 tactacctccgttcctttttaattgtcac 39073255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 44360692 - 44360662
Alignment:
Q  303 attactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||||    
T  44360692 attactacctccgttcctttttaattgtcac 44360662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 3363848 - 3363815
Alignment:
Q  298 tgtttattactacctccgttcctttttaattgtc 331  Q
    ||||| ||||||||||||||||||||||||||||    
T  3363848 tgtttgttactacctccgttcctttttaattgtc 3363815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 15182986 - 15183015
Alignment:
Q  304 ttactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||||||    
T  15182986 ttactacctccgttcctttttaattgtcac 15183015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 8443939 - 8443907
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||| |||||||||||||||||||    
T  8443939 ttattactacctctgttcctttttaattgtcac 8443907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 10812456 - 10812428
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  10812456 tactacctccgttcctttttaattgtcac 10812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 11222302 - 11222330
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  11222302 tactacctccgttcctttttaattgtcac 11222330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 13849700 - 13849728
Alignment:
Q  304 ttactacctccgttcctttttaattgtca 332  Q
    |||||||||||||||||||||||||||||    
T  13849700 ttactacctccgttcctttttaattgtca 13849728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 15893566 - 15893594
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  15893566 tactacctccgttcctttttaattgtcac 15893594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 26342837 - 26342809
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  26342837 tactacctccgttcctttttaattgtcac 26342809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 34357435 - 34357407
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  34357435 tactacctccgttcctttttaattgtcac 34357407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 34399463 - 34399431
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||| ||||    
T  34399463 ttattactacctccgttcctttttaattatcac 34399431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 36375830 - 36375802
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  36375830 tactacctccgttcctttttaattgtcac 36375802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 148564 - 148535
Alignment:
Q  301 ttattactacctccgttcctttttaattgt 330  Q
    ||||||||||||||||||||||||||||||    
T  148564 ttattactacctccgttcctttttaattgt 148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 13158424 - 13158453
Alignment:
Q  301 ttattactacctccgttcctttttaattgt 330  Q
    ||||||||||||||||||||||||||||||    
T  13158424 ttattactacctccgttcctttttaattgt 13158453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 2642963 - 2642931
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    |||||||| ||||||||||||||||||||||||    
T  2642963 ttattactccctccgttcctttttaattgtcac 2642931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 2858566 - 2858594
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  2858566 tactacctccgttcctttttaattgtcac 2858594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 20105430 - 20105402
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  20105430 tactacctccgttcctttttaattgtcac 20105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 29803905 - 29803877
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  29803905 tactacctccgttcctttttaattgtcac 29803877  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 33491128 - 33491156
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  33491128 tactacctccgttcctttttaattgtcac 33491156  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 40139831 - 40139859
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  40139831 tactacctccgttcctttttaattgtcac 40139859  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 41351183 - 41351211
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  41351183 tactacctccgttcctttttaattgtcac 41351211  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 41425886 - 41425858
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  41425886 tactacctccgttcctttttaattgtcac 41425858  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 45101347 - 45101375
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  45101347 tactacctccgttcctttttaattgtcac 45101375  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 49123783 - 49123751
Alignment:
Q  301 ttattactacctccgttcctttttaattgtcac 333  Q
    ||||||||||||||||||||||||||| |||||    
T  49123783 ttattactacctccgttcctttttaatagtcac 49123751  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 51219082 - 51219110
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  51219082 tactacctccgttcctttttaattgtcac 51219110  T

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Target: scaffold0280 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 8411 - 8383
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  8411 tactacctccgttcctttttaattgtcac 8383  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 147111 - 147139
Alignment:
Q  305 tactacctccgttcctttttaattgtcac 333  Q
    |||||||||||||||||||||||||||||    
T  147111 tactacctccgttcctttttaattgtcac 147139  T

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