View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_high_85 (Length: 313)
Name: NF3772_high_85
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_85 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 7125858 - 7126146
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
7125858 |
ggaaagctcacccatcgggtaaatttaaacttaatgtggatggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattccagacgctgcatg |
7125957 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7125958 |
aaattgggtggcaggattctcatctaatgatggttgcggtgatgcgtttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
7126057 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7126058 |
tcggtgttgcatgttgagtgtgagaca-actccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatgct |
7126146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 6756444 - 6756733
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
6756444 |
ggaaagctcccccatcgggtaaatttaaacttaatgtggacggaagttgcgaccaaagtggtgtcatcggttcaggaggattgattcgagacgctacagg |
6756543 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6756544 |
aaattgggtggcaggattctcatccaatgatggttgcggtgatgcgcttattgctgagttgtttggtatttataacggtttggtcttgttgataaacaat |
6756643 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6756644 |
tcggtgttgcatgttgagtgtgagacagactccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatgct |
6756733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 163 - 305
Target Start/End: Original strand, 21812544 - 21812684
Alignment:
| Q |
163 |
ttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaattcggtgttgcatgttgagtgtgagacagactccactaagatcataaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21812544 |
ttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaattcgat--tgcatgttgagtgtgagacagactccactgagatcataaa |
21812641 |
T |
|
| Q |
263 |
cctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21812642 |
cctacttatggacagacaatctcactcattccatgcttatgct |
21812684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 21812472 - 21812536
Alignment:
| Q |
23 |
ctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggt |
86 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21812472 |
ctcccccatccggtaaatttaaacttaatgtggacggaagttgtgaccaaagtggtgtcatcggt |
21812536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 1808112 - 1807823
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
1808112 |
ggaaagctcccccatcgggtaaatttaaacttaatgtggacggaagttgtgaccaaagtggtgtcatcggttcaggaggattgattcgagacgctacagg |
1808013 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1808012 |
aaattgggtggcaggattctcatctaatgatggttgcggtgatgcgcttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
1807913 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
1807912 |
tcggtgttgcatattgagtgtgagacagactccactgagatcataaacctacttatggacagacaatctcactcatttcatacttatgct |
1807823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 49348857 - 49349146
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
|||||||||||||||| | ||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||| | |
|
|
| T |
49348857 |
ggaaagctcccccatcggataaatttaaagttaatgtggacggaagttgtgaccaaagtggtgttatcggttcatgaggattgattcgagacgctacagg |
49348956 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49348957 |
aaattgggtggcagggttctcatctaatgatggttgcggtgatgcgcttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
49349056 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49349057 |
tcggtgttgcatgttgagtgtgagacagactccactgagatcaaaaacctacttatggacagacaatctcactcattccatgcttatgct |
49349146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 27525213 - 27525502
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
27525213 |
ggaaagctcccccatcgggtaaatttaaatttaatgtggacggaagttgtgaccaaagtggtgtcatcggttcgggaggattgattcgagacgctacagg |
27525312 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27525313 |
aaattgggtggcaggattctcatctaatgatggttgcggtgatgcgcttatttctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
27525412 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27525413 |
tcggtgttgcatgttgagtgtgagacagactccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatgct |
27525502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 37 - 305
Target Start/End: Complemental strand, 45951899 - 45951631
Alignment:
| Q |
37 |
aatttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatgaaattgggtggcaggattatc |
136 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| |||||||||||||||||| | |||||||| ||||||| | |||||| |||||| ||||| || |
|
|
| T |
45951899 |
aatttaaactcaatgtggatggcagttgtgatcaaactggtgtcatcggttcaggtgaattgattcgagacgctgcgggaaattaggtggctggattctc |
45951800 |
T |
|
| Q |
137 |
atctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaattcggtgttgcatgttgagtgt |
236 |
Q |
| |
|
||||||||||||| || | |||| | |||| ||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| |
|
|
| T |
45951799 |
atctaatgatggtcgcagcgatgcacttatcgctgagttgtttggaatttataatggtttggttcttttgataaacaatttggtgttgcatgttgagtgt |
45951700 |
T |
|
| Q |
237 |
gagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
45951699 |
gagacagactccactgagatcataaacctacttatggacacacaatctcactccttccatgcttatgct |
45951631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 48 - 305
Target Start/End: Complemental strand, 24136494 - 24136236
Alignment:
| Q |
48 |
aatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggatt-gattcaagacgctacatgaaattgggtggcaggattatcatctaatgat |
146 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||| ||| |||||| |||||||| ||| ||||| |||||||||||| |
|
|
| T |
24136494 |
aatgtggatggaagttgtgaccaaagtcgtgtcatcggttcaggaggatttgattcgagatgctacaggaaattggatggttggattctcatctaatgat |
24136395 |
T |
|
| Q |
147 |
ggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaattcggtgttgcatgttgagtgtgagacagact |
246 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24136394 |
ggttgcggcgatgcgcttattgttgagttgtttggaatttataacggtttggtccttttgataaacaattcggtgttgcatgttgagtgtgagacatact |
24136295 |
T |
|
| Q |
247 |
ccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
||||| |||| ||||||||| ||||||||| | ||||||||| |||||||| |||||| |
|
|
| T |
24136294 |
ccactgagattataaacctatttatggacatataatctcacttcttccatgcttatgct |
24136236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 41011762 - 41012051
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
41011762 |
ggaaagctcccccatcgggtaaatttaaacttaatatggacggaagttgtgaccaaagtggtgtcatcggttcaggaggattgattcgagacgctacagg |
41011861 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41011862 |
aaattgggtggcaggattctcatataatgatggttgcggtgatgcgcttattgctgagttgtttggaatttataacggtttgatcttgttgataaacaat |
41011961 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41011962 |
tcggtgttgcatgttgagtgtgagacagactccactgagatcataaacctacttatggatagacaatctcactcattccatgcttatgct |
41012051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 23109706 - 23109995
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaa-tttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| | | |
|
|
| T |
23109706 |
ggaaagctctcccatcgggtaaatttaaacttaatgtggatggaagttgtgaccaaagtggtatcatcggttcaggaggattgattcgagacgctatagg |
23109805 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23109806 |
aaattgggtggcaggattctcatctaatgatggttgcggtgatgcgcttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
23109905 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23109906 |
tcggtgttgcatgttgagtgtgagacagactccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatgct |
23109995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 31076360 - 31076648
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaatttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatga |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
31076360 |
ggaaagctcccccatcgggtaatttaaacttaatgaggatggaagttgtgaccaaagtggtgtcatcggttcaggaggattgattcgagacgctacagga |
31076459 |
T |
|
| Q |
117 |
aattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaatt |
216 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31076460 |
aattgggtggtaggattctcatctaatgatggttgtggtgatgcgcttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaatt |
31076559 |
T |
|
| Q |
217 |
cggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatgct |
305 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31076560 |
cggtcttgcatgttgagtgtgagacaaactccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatgct |
31076648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 47194846 - 47195056
Alignment:
| Q |
88 |
caggaggattgattcaagacgctacatgaaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaattta |
187 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
47194846 |
caggaggattgattcgagacgctataggaaattgggtgacaggattctcatctaatgatggttgtggtgatgcgcttattgctgagttgtttggaattta |
47194945 |
T |
|
| Q |
188 |
taacggtttggtcttgttgataaacaattcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcac |
287 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47194946 |
taacagtttggtcttgttgataaacaattcggtgttgcatgttgagtgtgagacagactccactgagatcataaacttacttatggacagacaatctcac |
47195045 |
T |
|
| Q |
288 |
tcattccatgc |
298 |
Q |
| |
|
||||||||||| |
|
|
| T |
47195046 |
tcattccatgc |
47195056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 40 - 272
Target Start/End: Original strand, 19915753 - 19915985
Alignment:
| Q |
40 |
ttaaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatgaaattgggtggcaggattatcatc |
139 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| || | ||||||||||||| ||||| | ||| |
|
|
| T |
19915753 |
ttaaactcaatgtggatggaagttgtgaccaaagtggtgtcatcggttcaggaggattgattcgagatgccggaggaaattgggtggctggattcttatc |
19915852 |
T |
|
| Q |
140 |
taatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaattcggtgttgcatgttgagtgtgag |
239 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19915853 |
taatgatggttgcggcgatgcgcttattgttgagttgtttgaaatttataacggtttggtccttttgataaacaattcagtgttgcatgttgagtgtgag |
19915952 |
T |
|
| Q |
240 |
acagactccactaagatcataaacctacttatg |
272 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
19915953 |
acagactccactgagatcataaacctacttatg |
19915985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 44083551 - 44083519
Alignment:
| Q |
271 |
tggacagacaatctcactcattccatgcctatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
44083551 |
tggacagacaatctcactcattccatgcttatg |
44083519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 104 - 305
Target Start/End: Complemental strand, 34551690 - 34551489
Alignment:
| Q |
104 |
agacgctacatgaaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttg |
203 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34551690 |
agacgttacatgaaattgggtggtaggattctcatctaatgatggttgcggtgatgcgcttattgttgagttgtttggaatttataacggtttggtcttg |
34551591 |
T |
|
| Q |
204 |
ttgataaacaattcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgcctatg |
303 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34551590 |
ttgataaacaatttggtgttgtatgttgagtgtgagacagactccactgagatcataaacctacttatggacagacaatctcactcattccatgcttatg |
34551491 |
T |
|
| Q |
304 |
ct |
305 |
Q |
| |
|
|| |
|
|
| T |
34551490 |
ct |
34551489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 26880844 - 26881126
Alignment:
| Q |
17 |
ggaaagctcccccatcaggtaatt-taaacttaatgtggacggaagttgtgatcaaagtggtgtcatcggttcaggaggattgattcaagacgctacatg |
115 |
Q |
| |
|
||||||||||||||| ||||| | |||||| |||||||| || | ||||||||||| |||||||||||||||||||||||| |||| ||| ||| | |
|
|
| T |
26880844 |
ggaaagctcccccattgggtaaatataaactcaatgtggatggcatttgtgatcaaactggtgtcatcggttcaggaggattaattcgagaagctgtggg |
26880943 |
T |
|
| Q |
116 |
aaattgggtggcaggattatcatctaatgatggttgcggtgatgtatttattgctgagttgtttggaatttataacggtttggtcttgttgataaacaat |
215 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
26880944 |
aaattgggtggctggattctcatctaatgatggttgcggcgatgcgcttatcgctgagttgtttggaatttataatggtttggtccttttgataaacaat |
26881043 |
T |
|
| Q |
216 |
tcggtgttgcatgttgagtgtgagacagactccactaagatcataaacctacttatggacagacaatctcactcattccatgc |
298 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
26881044 |
gcggtgttccatgttgagtgtgagatagactccactgagatcattaacctacttattgacggacaatctcactccttccatgc |
26881126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University