View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_9 (Length: 621)
Name: NF3772_high_9
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 606
Target Start/End: Complemental strand, 24129348 - 24128756
Alignment:
| Q |
14 |
gaatattgggactttctgcaaaattaaggaccatacgttaaattcttctgctagaatggaatatttgatcataaatttaggtatgtgttttacctggacg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
24129348 |
gaatattgggactttctgcaaaattaaggaccatacgttaaattcttctgttagaatggaatatttgatcgtaaattttggtatgtgttttacctggacg |
24129249 |
T |
|
| Q |
114 |
aaaaaccctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctttttaagtccataagcgtagcaccgatagcaagtccaagac |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24129248 |
aaaaatcctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctcttttcaagtccataagcgtagcaccgatagcaagtccaagac |
24129149 |
T |
|
| Q |
214 |
cctgcatcacaaccagccattgttagcacggtaatctagccattttagccaatattataaaaaccgaacatgcgagacctttaggtcgtgattcaactgc |
313 |
Q |
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||||| || ||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24129148 |
cctgcttcgcaatcagccattgttagcaccgtaagctagctattttagccaatattataaaaaccgaacatgcgagacctttaggtcgtggttcaactgc |
24129049 |
T |
|
| Q |
314 |
cttaaactgctcaaacctaggtaaaattgtgatagaatcgccaatactaccaaacagtaataaaggctcggttcaaggttcaaccagctgaactgttttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24129048 |
cttaaactgctcaaacctaggtaaaattgtgatagaatcgccaatattaccaaacagtaataaaggctcggttcaaggttcaaccagctgaactgttttg |
24128949 |
T |
|
| Q |
414 |
ttcggtttttaaaacactgagtttaatttatattgtattgtcttgatagtattttcagaaatgcatacctgagctgcaatgatgcagaggaaaacagtaa |
513 |
Q |
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| T |
24128948 |
ttcggtttttaaaactctgagtttaatttatattgtattgtcttgatagtattttcagaaatgcatacctgagctgcaatgatgcagaggaaaacagtaa |
24128849 |
T |
|
| Q |
514 |
gaatggtgaggaaaaagggagcagcacttggtcttagaccagccatgaagtaaacaacaaggagaaaaagcactggtaatatcaggtctaatg |
606 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128848 |
gaatggtgaggaaaaagggagcagcacttagtcttagaccagccatgaagtaaacaacaaggagaaaaagcactggtaatatcaggtctaatg |
24128756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 75 - 606
Target Start/End: Complemental strand, 24147248 - 24146720
Alignment:
| Q |
75 |
tatttgatcataaatttaggtatgtgtttt-acctggacgaaaaaccctccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctt |
173 |
Q |
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||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||| |
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| T |
24147248 |
tatttgatcattaatttaggtatgtgttttcacctggacaaaaaatcctccagccagcatgaagatcatcacggttacggaacccaaagttgttgcactt |
24147149 |
T |
|
| Q |
174 |
tttaagtccataagcgtagcaccgatagcaagtccaagaccctgcatcacaaccagccattgttagcacggtaatct-agccattttagccaatattata |
272 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| || || ||||||| |||| || | |
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| T |
24147148 |
ttcgagtccataagcacagcaccgatagcaagtccaagaccctgcttcacaaccagccattgttagctctgtaagctaagatattttagtcaatgtttca |
24147049 |
T |
|
| Q |
273 |
aaaaccgaacatgcgagacctttaggtcgtgattcaactgccttaaactgctcaaacctaggtaaaat-tgtgatagaatcgccaatactaccaaacagt |
371 |
Q |
| |
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||||| ||||| ||||||||| |||||| ||||||||| |||||||||||| | | |||||| ||| || |||| || | ||| | ||| ||| || |
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| T |
24147048 |
aaaactgaacaggcgagacctctaggtcatgattcaaccaccttaaactgct-agaactaggttgaatctgggatacaaccaccataataaccgaacggt |
24146950 |
T |
|
| Q |
372 |
aataaaggctcggttcaaggttcaaccagctgaactgttttgttcg-gtttttaaaacactgagtttaatttatattgtattgtcttgatagtattttca |
470 |
Q |
| |
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||||||| | | ||||||||||| ||| |||||||||| ||||| |||||||||||| || |||| ||| ||| ||||||| ||||||||| |
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| T |
24146949 |
aataaagtc-cagttcaaggttccaccgattgaactgtttagttcgattttttaaaacaccgactttagtttttatcgtattgt-----tagtattttat |
24146856 |
T |
|
| Q |
471 |
gaaatgcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgaggaaaaagggagcagcacttggtcttagaccagccatgaagtaaacaa |
570 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
24146855 |
gaaatgcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgagaaaaaaggaggcagcacttagtctcagaccagccatgaagtaaacaa |
24146756 |
T |
|
| Q |
571 |
caaggagaaaaagcactggtaatatcaggtctaatg |
606 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||| |
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| T |
24146755 |
caagtagaaaaagcactgataatatcaggtctaatg |
24146720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 24147329 - 24147280
Alignment:
| Q |
14 |
gaatattgggactttctgcaaaattaaggaccatacgttaaattcttctg |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
24147329 |
gaatattgggactttctgcaaaattaagtaccacatgttaaattcttctg |
24147280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 476 - 603
Target Start/End: Original strand, 43530869 - 43530996
Alignment:
| Q |
476 |
gcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgaggaaaaagggagcagcacttggtcttagaccagccatgaagtaaacaacaagg |
575 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |||||||| | |||||||||| | ||||| |||| |||||||||||||| |||||||| ||| |
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| T |
43530869 |
gcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactagg |
43530968 |
T |
|
| Q |
576 |
agaaaaagcactggtaatatcaggtcta |
603 |
Q |
| |
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|| |||||||| ||||||| ||||||| |
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| T |
43530969 |
aggaaaagcaccggtaatacaaggtcta |
43530996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 43530684 - 43530777
Alignment:
| Q |
123 |
ccagccagcatgaaggtcatcaccgttaccgaagccaaagttgttgctctttttaagtccataagcgtagcaccgatagcaagtccaagaccct |
216 |
Q |
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||||||| ||| || ||||| || ||||| ||||||||||||||||| ||||| |||||||| || ||||| || |||||||||||||| |||| |
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| T |
43530684 |
ccagccaacataaaagtcatgacagttactgaagccaaagttgttgcccttttcaagtccattagtgtagctccaatagcaagtccaagtccct |
43530777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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