View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_93 (Length: 301)
Name: NF3772_high_93
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_93 |
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| [»] scaffold2177 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 30576785 - 30577049
Alignment:
| Q |
21 |
cctcaaaccaacttagtctggtttaagaatatcaagaaacttgtaacgcccccactagatgttgatatcaagagttgagtatccaaattgtnnnnnnnga |
120 |
Q |
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| T |
30576785 |
cctcaaaccaacttagtctggtttaagaatatcaagaaacttgtaacgcccccactagatgttgatatcaagagttgagtatccaaattgtaaaaaaaga |
30576884 |
T |
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| Q |
121 |
accgcattcataaaagaaaggatcgaattaaagaataaatggctcaacagattgagaatgaattaatgttcctatctgctaatattctaatgtgagaatt |
220 |
Q |
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| T |
30576885 |
accgcattcataaaagaaaggatcaaattaaagaataaatggctcaacagattgagaatgaattaatgttcctatctgctaatattctaatgtgagaatt |
30576984 |
T |
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| Q |
221 |
ggtgagggttagcttaatataaatagagaattaccactattctatatgactactaggatttatat |
285 |
Q |
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| T |
30576985 |
ggtgagggttagcttaatatcaatagagaattaccactattctatatgactactaggatttatat |
30577049 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 9783336 - 9783270
Alignment:
| Q |
163 |
ctcaacagattgagaatgaatt--aatgttcctatctgctaatattctaatgtgagaattggtgagg |
227 |
Q |
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| T |
9783336 |
ctcagcagattgagaaagaattaaaatgttcatatctgccaatattctaaggtgagcattggtgagg |
9783270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2177 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 730 - 664
Alignment:
| Q |
202 |
atattctaatgtgagaattggtgaggg-ttagcttaatataaatagagaattaccactattctatat |
267 |
Q |
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| T |
730 |
atattctaatctgagaattggggaggcattagcttaatatcaattgagagttaccaatattctatat |
664 |
T |
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