View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3772_low_1 (Length: 1424)
Name: NF3772_low_1
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_1 |
 | |
|
| [»] scaffold0137 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 864; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 117 - 1077
Target Start/End: Original strand, 3896332 - 3897297
Alignment:
| Q |
117 |
agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896332 |
agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
3896431 |
T |
|
| Q |
217 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3896432 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaaaatggacctaatgagggtgattcttaaataatacttatatggaatgac |
3896531 |
T |
|
| Q |
317 |
taaaa-gtc--taaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctg |
411 |
Q |
| |
|
||||| | | | | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896532 |
taaaatgacattcatagcacatctccttcagaggaagaatacaccccgtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctg |
3896631 |
T |
|
| Q |
412 |
caagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgatt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896632 |
caagaagccaaatatagctttaacttagattatgatcaactttggataatattataaagagatcaatgattattaatcaaaatgctttgacgtgatgatt |
3896731 |
T |
|
| Q |
512 |
atggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctccc |
611 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896732 |
attgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctccc |
3896831 |
T |
|
| Q |
612 |
aatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagaca |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896832 |
aatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagaca |
3896931 |
T |
|
| Q |
712 |
cataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtg |
811 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896932 |
cataaagcatttgataagaataggtctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgta |
3897031 |
T |
|
| Q |
812 |
tccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaa |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897032 |
tccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaa |
3897131 |
T |
|
| Q |
912 |
acaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagcca |
1011 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897132 |
acaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagcca |
3897231 |
T |
|
| Q |
1012 |
aacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
1077 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3897232 |
aacccaatcttataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 1171 - 1424
Target Start/End: Original strand, 3898713 - 3898966
Alignment:
| Q |
1171 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
1270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
3898812 |
T |
|
| Q |
1271 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3898813 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactcggat |
3898912 |
T |
|
| Q |
1371 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattcttt |
1424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3898913 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattcttt |
3898966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 7e-71
Query Start/End: Original strand, 1171 - 1411
Target Start/End: Complemental strand, 46283571 - 46283331
Alignment:
| Q |
1171 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
1270 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttcat |
46283472 |
T |
|
| Q |
1271 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1370 |
Q |
| |
|
|| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
46283471 |
cttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctgat |
46283372 |
T |
|
| Q |
1371 |
tcaactttggacttgtatttcttaacatgcacaacgtgatc |
1411 |
Q |
| |
|
||||||||||| |||| | ||| ||| ||||||| ||||| |
|
|
| T |
46283371 |
tcaactttggatctgtaatccttcacaagcacaacatgatc |
46283331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 914 - 1063
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
914 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
1013 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
1014 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
1063 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 388 - 502
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
388 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
485 |
Q |
| |
|
|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
|
|
| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
486 |
aatcaaaatgctttgac |
502 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 521 - 674
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
521 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
617 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
|
|
| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
618 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
674 |
Q |
| |
|
|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3889690 - 3889730
Alignment:
| Q |
18 |
gaaagaagattgcatgagacatggaaaatatacctaaaaaa |
58 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3889690 |
gaaagaagattgcaggagacatggaaaatatacctaaaaaa |
3889730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 862; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 117 - 1077
Target Start/End: Original strand, 3997 - 4953
Alignment:
| Q |
117 |
agaaaaaggtaatcaatgtacatgaggaatggaacaaacaaaatgcccaaaaacaccccaaccaaacctgaagaaagagcacctacaacactgaaaccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3997 |
agaaaaaggtaatcaatgtacatgaggaatggaacacacaaaatgcccaaaaacaccccaaccaaacctaaagaaagagcacctacaacactgaaaccaa |
4096 |
T |
|
| Q |
217 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4097 |
caacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaattaacacttatatggaatgac |
4196 |
T |
|
| Q |
317 |
taaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcaa |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4197 |
taaaa--------tgacatctccttcagaggaagaatacaccccgtctgtcaacctatatggaatatcagtgctcaatgctcgtctagctggtcctgcat |
4288 |
T |
|
| Q |
415 |
gaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgattatg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4289 |
gaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaatgctttgacgtgatgattatt |
4388 |
T |
|
| Q |
515 |
gtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaat |
614 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4389 |
gtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaat |
4488 |
T |
|
| Q |
615 |
ttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacat |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4489 |
ttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacatgaacagaaaagagagacacat |
4588 |
T |
|
| Q |
715 |
aaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgc--aatattattaattttctcaaactattatcattgttgacgtgt |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4589 |
aaagcatttgataagaataggcctttgttcattcacctacacatataattacatgcttaatattattaattttctcaaactattatcattgttgacgtat |
4688 |
T |
|
| Q |
813 |
ccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaa |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689 |
ccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaa |
4788 |
T |
|
| Q |
913 |
caaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaa |
1012 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4789 |
caaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaa |
4888 |
T |
|
| Q |
1013 |
acccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
1077 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4889 |
acccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 1171 - 1424
Target Start/End: Original strand, 5044 - 5297
Alignment:
| Q |
1171 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
1270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
5143 |
T |
|
| Q |
1271 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
1370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5144 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactctgat |
5243 |
T |
|
| Q |
1371 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattcttt |
1424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5244 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattcttt |
5297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1231 - 1272
Target Start/End: Complemental strand, 27125481 - 27125440
Alignment:
| Q |
1231 |
tcttaaactcagccatatacctttgataatcacctttcatct |
1272 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
27125481 |
tcttaaactcagcaagatacctatgataatcacctttcatct |
27125440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 981 - 1018
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
981 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
1018 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
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