View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_low_102 (Length: 298)
Name: NF3772_low_102
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_low_102 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 2338096 - 2337830
Alignment:
| Q |
16 |
actctatggggagattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaa |
115 |
Q |
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| T |
2338096 |
actctatggggtgattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaa |
2337997 |
T |
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| Q |
116 |
cttttgagaatccaaatagaatcaaacacaggggaataaaataaaggagtgcaattgttgtgccgtttattaggctactaagaaccaaatccattatagt |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337996 |
cttttgagaatccaaatagaatcaaacataggggaataaaataaaggagtgcaatagttgtgccgtttattaggctactaagaaccaaatccattatagt |
2337897 |
T |
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| Q |
216 |
tagatgaggttgtattgtgtttgtgtcggagattggtggatatagatgtgccatgagtattagctta |
282 |
Q |
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| T |
2337896 |
tagatgaggttgtattgtgtttgtgtaggagattggtggatatagatgtgccatgagtattagctta |
2337830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 2305772 - 2305507
Alignment:
| Q |
19 |
ctatggggagattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaactt |
118 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |
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| T |
2305772 |
ctatggggtgattgtgtgccactaaaaagtgagaggtgaccaagtattggccatgcaccttcggctattggtgcctctttggttttgctatgaacaaatt |
2305673 |
T |
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| Q |
119 |
ttgagaatccaaatagaatcaaacacaggggaata---aaataaaggagtgcaattgttgtgccgtttattaggctactaagaaccaaatccattatagt |
215 |
Q |
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| T |
2305672 |
ttgagaatccaaatagaaacaaacataggggaataatgaaataaaggagtgcaattgttgttgagtttattaggttgctaagaacaaaatccattatagt |
2305573 |
T |
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| Q |
216 |
tagatgaggttgtattgtgtttgtgtcggagattggtggatatagatgtgccatgagtattagctta |
282 |
Q |
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|||| |||||||| ||||| || ||| ||||||| ||||||||||||||||||| |||||||||||| |
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| T |
2305572 |
tagacgaggttgtgttgtgatt-tgtaggagattagtggatatagatgtgccattagtattagctta |
2305507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 2349145 - 2348971
Alignment:
| Q |
16 |
actctatggggagattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaa |
115 |
Q |
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||||| ||||| | |||| |||||| ||||| || ||| ||||||||||||||||||||||||| ||||| || || ||||| |||||||| ||| || |
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| T |
2349145 |
actctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctgtgagaaa |
2349046 |
T |
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| Q |
116 |
cttttgagaatccaaatagaatcaaacacaggggaataaaataa---aggagtgcaattgttgtgccgtttatta |
187 |
Q |
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|||||||| ||||||||||| ||||| |||||||| | | || |||||||||||||||||| ||||||||| |
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| T |
2349045 |
attttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtggcgtttatta |
2348971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 5806200 - 5806317
Alignment:
| Q |
18 |
tctatggggagattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgcctctttatttttgctatgaacaact |
117 |
Q |
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||||||||| | ||||||||||| ||||| || ||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| | |
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| T |
5806200 |
tctatggggtgcttgtgtgccacaaaaaattgggaggtgaccaagtattggccatgcacctttggctattggtgcctctttgtttttgctatgagcaaat |
5806299 |
T |
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| Q |
118 |
tttgagaatccaaataga |
135 |
Q |
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|| ||||||||||||||| |
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| T |
5806300 |
ttagagaatccaaataga |
5806317 |
T |
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