View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_104 (Length: 297)

Name: NF3772_low_104
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_104
NF3772_low_104
[»] chr3 (3 HSPs)
chr3 (75-286)||(226587-226798)
chr3 (166-263)||(27916230-27916327)
chr3 (166-281)||(9257730-9257845)
[»] chr8 (3 HSPs)
chr8 (166-248)||(13588370-13588452)
chr8 (173-282)||(15216814-15216922)
chr8 (173-282)||(36543780-36543889)
[»] chr7 (3 HSPs)
chr7 (166-282)||(32629240-32629356)
chr7 (173-282)||(33351350-33351459)
chr7 (166-282)||(11592318-11592434)
[»] chr4 (2 HSPs)
chr4 (166-270)||(56224403-56224507)
chr4 (173-282)||(23907847-23907956)
[»] chr1 (2 HSPs)
chr1 (166-282)||(49348939-49349055)
chr1 (205-271)||(52835775-52835841)
[»] chr6 (4 HSPs)
chr6 (174-282)||(9705429-9705537)
chr6 (173-267)||(20429182-20429276)
chr6 (173-282)||(6081076-6081185)
chr6 (173-229)||(20473256-20473312)
[»] chr2 (2 HSPs)
chr2 (173-265)||(8179438-8179530)
chr2 (173-267)||(37280752-37280845)
[»] chr5 (1 HSPs)
chr5 (179-282)||(2077023-2077126)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 75 - 286
Target Start/End: Original strand, 226587 - 226798
Alignment:
Q  75 ctatttcacgatatgtatgttgtccggccaatatgtcttgccactattcatattttccaacacttattttctcgtgttcatgaatctaatatctagcatg 174  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  226587 ctatatcacgatatgtatgttgtccggccaatatgtcttgccactatccatattttccaacacttcttttctcgtgttcatgaatctaatatctagcatg 226686  T
Q  175 ttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttacatt 274  Q
    |||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  226687 ttagagtccagtaggatcttatatccatgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctaaaccaaaactttacatt 226786  T
Q  275 cttcatcccttt 286  Q
    ||||||||||||    
T  226787 cttcatcccttt 226798  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Complemental strand, 27916327 - 27916230
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaa 263  Q
    ||||||||||||||| || ||||||||| ||||| || |||||||| | |||| ||||| ||||  |||| ||||||||||||  | |||||||||||    
T  27916327 tctagcatgttagaggctggtaagatctcatatccttcattaaataggttgtggaaatacttcttccatctatcatttatatctctgtcctgaaccaa 27916230  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 9257845 - 9257730
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    |||||||||||||| | |  |||||||| ||||| || |||||||||| |||| | ||||||||  |||| ||  ||||||||  |||||||||| ||||    
T  9257845 tctagcatgttagattatgataagatctcatatccttcattaaataagttgtggagataattcttccatctattctttatatctatttcctgaacaaaaa 9257746  T
Q  266 ctttacattcttcatc 281  Q
    || ||| || ||||||    
T  9257745 ctctaccttattcatc 9257730  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 13588452 - 13588370
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatc 248  Q
    ||||||||||||||||||  |||||||| ||||| || |||||||||| |||||||||| |||| ||||| |||||| |||||    
T  13588452 tctagcatgttagagtctgataagatctcatatcattcattaaataaggtgtgaaaatatttctttcatctatcattgatatc 13588370  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 15216814 - 15216922
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttaca 272  Q
    ||||||||||| |||| |||| ||||| || |||||||||| |||| ||||| ||||  |||| ||| || ||||| ||||| |||||||||||| |||     
T  15216814 tgttagagtctggtaaaatctaatatccttcattaaataagttgtggaaatacttcttccatctatccttaatatc-ttttcttgaaccaaaactctacc 15216912  T
Q  273 ttcttcatcc 282  Q
     |||||||||    
T  15216913 ctcttcatcc 15216922  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 36543889 - 36543780
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttaca 272  Q
    ||||||||||| ||||||||| ||||| || |||||||| | || ||||||| ||||  |||| | | || |||||  |||||||||||| ||||||||     
T  36543889 tgttagagtctggtaagatctcatatccttcattaaataggttgagaaaatacttcttccatctacccttaatatctctttcctgaaccagaactttacc 36543790  T
Q  273 ttcttcatcc 282  Q
     |||||||||    
T  36543789 ctcttcatcc 36543780  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 32629356 - 32629240
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    |||| ||||||||||||| ||||||||| ||||| || |||||||||| |||| ||||| ||||  |||| ||| || |||||  |||| ||||||||||    
T  32629356 tctaacatgttagagtctggtaagatctcatatccttcattaaataagttgtggaaatacttcttccatctatccttaatatctctttcttgaaccaaaa 32629257  T
Q  266 ctttacattcttcatcc 282  Q
    || |||  |||||||||    
T  32629256 ctctaccctcttcatcc 32629240  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 33351350 - 33351459
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttaca 272  Q
    ||||||||||| ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||| |||| |||     
T  33351350 tgttagagtctggtaagatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccagaactctacc 33351449  T
Q  273 ttcttcatcc 282  Q
     |||||||||    
T  33351450 ctcttcatcc 33351459  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 11592434 - 11592318
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    |||| ||| ||||||||| ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||| ||    
T  11592434 tctaacatattagagtctggtaagatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccagaa 11592335  T
Q  266 ctttacattcttcatcc 282  Q
    || |||  |||||||||    
T  11592334 ctctaccctcttcatcc 11592318  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 56224507 - 56224403
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    |||||| ||||| | ||| ||||||||| ||||| || |||||||||| |||||||||  ||||  |||| ||| |||||||| ||||||| ||||||||    
T  56224507 tctagcctgttaaactctggtaagatctcatatcgttcattaaataagttgtgaaaatgcttcttccatctatcctttatatccttttcctaaaccaaaa 56224408  T
Q  266 cttta 270  Q
    |||||    
T  56224407 cttta 56224403  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 23907847 - 23907956
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttaca 272  Q
    ||||||||| | ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||| |||| |||     
T  23907847 tgttagagtttggtaagatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccagaactctacc 23907946  T
Q  273 ttcttcatcc 282  Q
     |||||||||    
T  23907947 ctcttcatcc 23907956  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 49348939 - 49349055
Alignment:
Q  166 tctagcatgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    |||| ||||||||||||| ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||| ||    
T  49348939 tctaacatgttagagtctggtaagatctcatatcgttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccagaa 49349038  T
Q  266 ctttacattcttcatcc 282  Q
    || |||  |||||||||    
T  49349039 ctctaccctcttcatcc 49349055  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 52835841 - 52835775
Alignment:
Q  205 ttaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttac 271  Q
    ||||||||| |||||| ||| |||| ||||||||| | |||||| ||||| ||||||||||||||||    
T  52835841 ttaaataagttgtgaagatacttctttcatccatcctatatatctttttcatgaaccaaaactttac 52835775  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 9705537 - 9705429
Alignment:
Q  174 gttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttacat 273  Q
    |||||||||| ||| ||||| ||||| || |||||||||| |||| ||||| ||||  |||| ||| || |||||  |||| |||||||||||| |||      
T  9705537 gttagagtctggtatgatctcatatccttcattaaataagttgtggaaatacttcttccatctatccttaatatctatttcttgaaccaaaactctacca 9705438  T
Q  274 tcttcatcc 282  Q
    |||||||||    
T  9705437 tcttcatcc 9705429  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 20429182 - 20429276
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaact 267  Q
    ||||||||||| |||||||||  |||| || |||||||||| |||| ||||| ||||  |||| ||| || |||||  |||| ||||||||||||    
T  20429182 tgttagagtctggtaagatctcgtatccttcattaaataagttgtggaaatatttcttccatctatccttaatatctctttcttgaaccaaaact 20429276  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 6081185 - 6081076
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttaca 272  Q
    ||||||||||| |||| |||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||| |||| |||     
T  6081185 tgttagagtctggtaatatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccagaactctacc 6081086  T
Q  273 ttcttcatcc 282  Q
     |||||||||    
T  6081085 ctcttcatcc 6081076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 20473312 - 20473256
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattct 229  Q
    ||||||||||| | ||||| | ||||| || |||||||||| |||||||||||||||    
T  20473312 tgttagagtctcgaaagatttcatatccttcattaaataagttgtgaaaataattct 20473256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 8179530 - 8179438
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaa 265  Q
    ||||||||||| ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  |||||||||||||||    
T  8179530 tgttagagtctggtaagatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccaaaa 8179438  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 37280845 - 37280752
Alignment:
Q  173 tgttagagtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaact 267  Q
    ||||||||||||||||||||| ||||||||  ||||| ||| |||| ||||| |||| ||||  ||| |||| |||  ||||| |||||||||||    
T  37280845 tgttagagtctagtaagatctcatatctttcgttaaacaagttgtggaaatacttctttcatttatccttta-atctctttcccgaaccaaaact 37280752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 2077023 - 2077126
Alignment:
Q  179 agtctagtaagatcttatatctttgattaaataagatgtgaaaataattctctcatccatcatttatatcattttcctgaaccaaaactttacattcttc 278  Q
    ||||| ||||||||| ||||| || |||||||| | |||||||||| ||||  |||| | | || |||||  ||||||||||||||| |||||  |||||    
T  2077023 agtctggtaagatctcatatccttcattaaataggttgtgaaaatacttcttccatctacccttaatatctctttcctgaaccaaaattttaccctcttc 2077122  T
Q  279 atcc 282  Q
    ||||    
T  2077123 atcc 2077126  T

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