View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_low_105 (Length: 296)

Name: NF3772_low_105
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_low_105
NF3772_low_105
[»] scaffold0182 (1 HSPs)
scaffold0182 (9-278)||(29806-30075)
[»] chr2 (3 HSPs)
chr2 (9-278)||(26397521-26397790)
chr2 (25-269)||(26459926-26460173)
chr2 (19-278)||(25830088-25830347)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-278)||(276916-277185)
[»] chr4 (2 HSPs)
chr4 (25-269)||(20646280-20646524)
chr4 (9-278)||(56108255-56108524)
[»] chr6 (1 HSPs)
chr6 (9-278)||(26014022-26014291)
[»] chr3 (1 HSPs)
chr3 (19-278)||(33002242-33002500)
[»] chr7 (1 HSPs)
chr7 (9-278)||(6965527-6965796)
[»] chr1 (3 HSPs)
chr1 (112-269)||(845527-845684)
chr1 (14-271)||(30400105-30400363)
chr1 (14-271)||(30406662-30406920)


Alignment Details
Target: scaffold0182 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 29806 - 30075
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 108  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29806 agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacatgaccatcatcatccaaatca 29905  T
Q  109 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29906 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttat 30005  T
Q  209 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30006 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 30075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 26397521 - 26397790
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 108  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26397521 agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 26397620  T
Q  109 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26397621 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttat 26397720  T
Q  209 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26397721 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgt 26397790  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 26460173 - 26459926
Alignment:
Q  25 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatc---caaatcaaatgcataaaaga 121  Q
    |||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||   |||||| |  ||||||||||    
T  26460173 acatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaaga 26460074  T
Q  122 atcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttct 221  Q
    |||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||  |||| |    
T  26460073 atcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagattttt 26459974  T
Q  222 aacatctttctccaagcaaccaactttctcatatcctccgtgttgttt 269  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||    
T  26459973 aatatctttctccaagcaaccaactttctcataccctccgtgttgttt 26459926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 25830088 - 25830347
Alignment:
Q  19 gaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaa 118  Q
    ||||| |||||||||||  ||||||||||||||||||| ||| |||||| |||||| |||||| |||||||| | |||||||||||||||| ||||||||    
T  25830088 gaaatcacatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaa 25830187  T
Q  119 agaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatt 218  Q
    | ||||| | |||||||||||||||| |||||||| |||||| |||||   |||| ||||| || |||||   |||||||||    |||||||||| |||    
T  25830188 aaaatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatt 25830287  T
Q  219 tctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    |||||  |||||||||||||| | ||  || ||||| ||||| |||||||||||||||||    
T  25830288 tctaatgtctttctccaagcagctaatgttttcataccctccatgttgtttggccattgt 25830347  T

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Target: scaffold0006 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 276916 - 277185
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 108  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  276916 agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 277015  T
Q  109 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  277016 aatgcataaaagaatcttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttat 277115  T
Q  209 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  277116 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgt 277185  T

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Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 20646280 - 20646524
Alignment:
Q  25 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 124  Q
    |||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||||    
T  20646280 acatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatc 20646379  T
Q  125 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 224  Q
    ||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||| ||| |||||||| | ||||||||||||  ||||||||     
T  20646380 ttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaat 20646479  T
Q  225 atctttctccaagcaaccaactttctcatatcctccgtgttgttt 269  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  20646480 atctttctccgagcaaccaactttctcatatcctccgtgttgttt 20646524  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 56108524 - 56108255
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 108  Q
    |||| |||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| |  ||||| |||||||||| ||||    
T  56108524 agtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatca 56108425  T
Q  109 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat 208  Q
    | |||||||||||||| || | |||||||||||||  |||||||| | || | |||||||||||||||||| |||||||||  |||||| ||  | ||||    
T  56108424 attgcataaaagaatcctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttat 56108325  T
Q  209 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    ||||||  ||||| ||||||||||||||||||||||  || ||||||||||| | || ||||||||||||    
T  56108324 ctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgt 56108255  T

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Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 26014291 - 26014022
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca 108  Q
    |||| |||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| |  ||||| |||||||||| ||||    
T  26014291 agtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatca 26014192  T
Q  109 aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat 208  Q
    | |||||||||||||| || | |||||||||||||  |||||||| | |||| |||||||||||||||||| |||||||||  |||||| ||  | ||||    
T  26014191 attgcataaaagaatcctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttat 26014092  T
Q  209 ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    ||||||  ||||| ||||||||||||||||||||||  || ||||||||||| | || ||||||||||||    
T  26014091 ctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgt 26014022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 33002500 - 33002242
Alignment:
Q  19 gaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaa 118  Q
    ||||| |||||||||||  ||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||||    
T  33002500 gaaatcacatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaa 33002401  T
Q  119 agaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatt 218  Q
    | ||||| | |||||||||||||||| |||||||| |||||| |||||   |||||||||| || |||||   |||||||||    |||||||||| |||    
T  33002400 a-aatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatt 33002302  T
Q  219 tctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    |||||  |||||||||||||| ||||  || ||||| ||||| |||||||||||||||||    
T  33002301 tctaatgtctttctccaagcatccaatgttttcataccctccatgttgtttggccattgt 33002242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 6965796 - 6965527
Alignment:
Q  9 agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatc 107  Q
    |||| |||| ||||| |||||||||||| ||| ||| |  |||||||| ||| ||| | ||||||||||||||||| |  ||||| |||||||||| |||    
T  6965796 agtatcaaatgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatc 6965697  T
Q  108 aaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtcctta 207  Q
    || |||||||||||||| || |||||||||||||||  |||||||| | |||| ||||||||||||||||||||||||||||  |||||| ||  | |||    
T  6965696 aattgcataaaagaatcctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgaccttta 6965597  T
Q  208 tctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgt 278  Q
    |||||||  ||||| |||||||||||||||||||||| | | ||||||||||| | || ||||||||||||    
T  6965596 tctaaatggtttcttacatctttctccaagcaaccaa-tgtttcatatcctccatattctttggccattgt 6965527  T

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Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 845527 - 845684
Alignment:
Q  112 gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatcta 211  Q
    |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  845527 gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta 845626  T
Q  212 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgttt 269  Q
    ||  |||| ||| |||||| ||| ||||||||||||||||||| ||||||||||||||    
T  845627 aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgttt 845684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 30400363 - 30400105
Alignment:
Q  14 caaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgc 113  Q
    |||| ||||| ||||  |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| |||||||   |    
T  30400363 caaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcac 30400264  T
Q  114 ataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatcta 211  Q
    | |||| |||||   ||||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || |||  |||  |||| ||||    |||||||    
T  30400263 acaaaaaaatctaagattttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatcta 30400165  T
Q  212 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttgg 271  Q
    ||| ||||||||  |||||||||||||||||||  || ||||||| ||| ||||||||||    
T  30400164 aatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30400105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 30406920 - 30406662
Alignment:
Q  14 caaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgc 113  Q
    |||| ||||| ||||  |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| |||||||   |    
T  30406920 caaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcac 30406821  T
Q  114 ataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatcta 211  Q
    | |||| |||||   ||||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || |||  |||  |||| ||||    |||||||    
T  30406820 acaaaaaaatctaagattttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatcta 30406722  T
Q  212 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttgg 271  Q
    ||| ||||||||  |||||||||||||||||||  || ||||||| ||| ||||||||||    
T  30406721 aatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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